PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 723aa    MW: 80123.2 Da    PI: 6.3869
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3143.2e-963577223374
                                                  GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlar.sv 57 
                                                           ++L++ Ae +++g++  +aq +Larl+++ sp g+++qR+a+yf+eAL+  l + + 
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 357 DQLYQLAELIETGNNPvRAQGILARLNHQLSPIGKSFQRAAFYFKEALQLLLRNsNN 413
                                                           79**********87766***********************************99445 PP

                                                  GRAS  58 selykal..ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                                                           +++ ++l  +p + ++ + + ++ a+k fsevsP+l+f+++t+Nqa+lea++g +++
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 414 TNCNASLslSPPPPPPISLIYKIGAYKSFSEVSPVLQFANFTCNQALLEALDGFDTI 470
                                                           5666666224555555669************************************** PP

                                                  GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                                           HiiDfdi+ G+QW +L+q+La +++g p l+iT+++sp+++++ el   +e L++fA
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 471 HIIDFDIGFGGQWSSLMQELALKQGGGPALKITAFSSPSTHDELELGFSQESLKHFA 527
                                                           ********************************************************* PP

                                                  GRAS 170 eelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                                           +e+++ fef++l  ++l++   +  Lrv++ Ea+aVnl    ++ +  +++l+    
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 528 TEINLAFEFDFLSLESLNSGsWPLPLRVSKSEAIAVNLPNGSFSNY--PLPLPL--- 579
                                                           ***********966666665236678*************9877776..666666... PP

                                                  GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                            vL +vk+lsPk+v   ++ +d ++ +F  ++++a++ ys lf+sl+a    ++++ 
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 580 -VLGFVKQLSPKIVFSLDRGCDQTDVPFPLHIIQAVQSYSGLFESLDAV-NINQDAL 634
                                                           .*********************************************665.5688899 PP

                                                  GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                                           + +Er ll++ i+++v  +  +      +   Wr+ + ++GF+p+++s+++++qa++
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 635 QRIERYLLQPGIEKIVLGRRCS----PDRTPPWRSLFLSSGFSPLTFSNFTESQAEC 687
                                                           99**************988777....89999************************** PP

                                                  GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l+++++++g++v++++ slvl+W++++L+s+S+W+
  augustus_masked-scaffold02500-abinit-gene-0.2-mRNA-1 688 LVQRTPVRGFHVKKNQTSLVLCWQRKELISASVWK 722
                                                           **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.557329702IPR005202Transcription factor GRAS
PfamPF035141.1E-93357722IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MPLPFEDFQG KGVLDFSTVS SDSLPHLHQH HHHHHHHHQQ QQLLQKWHHT NKENCYVGTE  60
PTSVLDSRRS PSPPTSTSTL SSSLGNGVAS TTAAAAAAAP ENHHQPSSQT SLDIGEKCGL  120
GMEDWEGVLS DSSSGQEQSI LRLIMGDIED PSLGLNKLLH QDLEFNSGFG MIDQADAFGC  180
LEMPNNLLPS IDPSADFPFN GGGTNATRLG SVSTPNHNPM FSVATSNNLL PGSLSHSPAM  240
FHHQQQQQQV QTIEAVDEKP QIFNPRMINP ARFAQNPALF MPTYTQLQEH HLVSQPQAKR  300
RNLCGIGPNY QVPKLPLSES EQDFLRRQQQ QQQNQLQMQK VGNNELASQQ QQQLLFDQLY  360
QLAELIETGN NPVRAQGILA RLNHQLSPIG KSFQRAAFYF KEALQLLLRN SNNTNCNASL  420
SLSPPPPPPI SLIYKIGAYK SFSEVSPVLQ FANFTCNQAL LEALDGFDTI HIIDFDIGFG  480
GQWSSLMQEL ALKQGGGPAL KITAFSSPST HDELELGFSQ ESLKHFATEI NLAFEFDFLS  540
LESLNSGSWP LPLRVSKSEA IAVNLPNGSF SNYPLPLPLV LGFVKQLSPK IVFSLDRGCD  600
QTDVPFPLHI IQAVQSYSGL FESLDAVNIN QDALQRIERY LLQPGIEKIV LGRRCSPDRT  660
PPWRSLFLSS GFSPLTFSNF TESQAECLVQ RTPVRGFHVK KNQTSLVLCW QRKELISASV  720
WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3336172125378Protein SCARECROW
5b3h_A1e-3236172124377Protein SCARECROW
5b3h_D1e-3236172124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908707.10.0LOW QUALITY PROTEIN: scarecrow-like protein 27
SwissprotO813161e-137SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2I4HCD60.0A0A2I4HCD6_JUGRE; scarecrow-like protein 22
STRINGEOX962960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-121GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]