PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 621aa    MW: 69184.8 Da    PI: 5.4462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.78.2e-962576203374
                                                  GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlar.sv 57 
                                                           ++L++ Ae +++g++  +aq +Larl+++ sp g+p+qR+a+yf+eAL+  l + + 
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 257 DQLYQLAELIETGNNPvRAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLRNtNN 313
                                                           79**********87766***********************************99666 PP

                                                  GRAS  58 selykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervH 113
                                                           +++ ++l  +s+ ++ + + ++ a+k fsevsP+l+f+++t+Nqa+lea++g +++ 
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 314 TNCNASLsLSSPPPPISLIFKIGAYKSFSEVSPVLQFANFTCNQALLEALDGFDTIR 370
                                                           67777774455556667**************************************** PP

                                                  GRAS 114 iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                                           +iDfdi+ G QW++L+q+La ++++ p l+iT+++sp+++++ el   +e+L++fA+
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 371 VIDFDIGFGWQWASLMQELALKQGDGPALKITAFVSPSTHDELELGFAQENLKDFAT 427
                                                           ********************************************************* PP

                                                  GRAS 171 elgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           e+++ fe+++l  ++l++   +  L+v++ Ea+aVnl    ++ +  ++sl+     
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 428 EINLAFEIQFLSLESLNSGsWPLPLHVSESEAIAVNLPTVSFSNY--PLSLPL---- 478
                                                           **********966666665236679*************9666665..777777.... PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           vL +vk+lsPk+v   ++ +d ++ +F +++++a++ ys+l++sl+a    + ++ +
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 479 VLGFVKQLSPKIVFSFDRGCDQTDFPFPDHIIHAVQSYSSLLESLDAV-NVNLDALQ 534
                                                           *********************************************665.3566999* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           k+Er ll++ i+++v  + +       +   Wr+ + ++GF+p+++s+++++qa++l
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 535 KIERYLLQPGIEKIVLGRCSP-----DRTPPWRSLFLSSGFSPLTFSNFTESQAECL 586
                                                           ****************99887.....7789*************************** PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l++++++g++ve+++ slvl+W++++L+s+S+Wr
  augustus_masked-scaffold02500-abinit-gene-0.4-mRNA-1 587 LQRTPVRGFHVEKKQTSLVLCWQRKELISASVWR 620
                                                           *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.266229600IPR005202Transcription factor GRAS
PfamPF035142.8E-93257620IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MQICNLLEAG GAISFYSQLQ RCSFEHPAFK VAPPLDIGEK CELGMEDWEG VLSESSPGQD  60
KSIMRLIMGD IEDPSLGLNK LLHQDSEFNS GFGIIDQAAA FGCLEMPNTL LPSIDPSADF  120
PFNGGGTNAT RLGSVSTPNH NPMFSVATSN NLSPVSQSHL PAMFHQQQQL QEHHLVSPTL  180
AKRYNLGGIE RNYQVPKLPF SEPGQELVRR QQQQQQNQLQ MLPQHIQQRP MMVSKQKVVC  240
NELASQQQQH AQQLLFDQLY QLAELIETGN NPVRAQGILA RLNHQLSPIG KPFQRAAFYF  300
KEALQLLLRN TNNTNCNASL SLSSPPPPIS LIFKIGAYKS FSEVSPVLQF ANFTCNQALL  360
EALDGFDTIR VIDFDIGFGW QWASLMQELA LKQGDGPALK ITAFVSPSTH DELELGFAQE  420
NLKDFATEIN LAFEIQFLSL ESLNSGSWPL PLHVSESEAI AVNLPTVSFS NYPLSLPLVL  480
GFVKQLSPKI VFSFDRGCDQ TDFPFPDHII HAVQSYSSLL ESLDAVNVNL DALQKIERYL  540
LQPGIEKIVL GRCSPDRTPP WRSLFLSSGF SPLTFSNFTE SQAECLLQRT PVRGFHVEKK  600
QTSLVLCWQR KELISASVWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-292426196378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908700.10.0scarecrow-like protein 6
SwissprotO813161e-144SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2I4ELR60.0A0A2I4ELR6_JUGRE; scarecrow-like protein 27
STRINGEOX962960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-139GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]