PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

TCP

Protein Properties

Length: 389aa MW: 41408.1 Da PI: 6.4738

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.4	2.4e-25	1	92	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++ ++s +ss augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIITATGTGTIPANFStLNVSLRSS 59 9**********************************************999888888888 PP TCP 82 asnsssg.........................k 89 +s+ s++ + augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 60 GSTLSAPpsksaphsfhgalalahhpyheegfA 92 885555544445555555555555555544442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.086	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-26	1	111	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIITAT GTGTIPANFS TLNVSLRSSG 60 STLSAPPSKS APHSFHGALA LAHHPYHEEG FAHPAFLGFH QHQQQQHQQH LMTADQIAEA 120 LPSGGGGDSG GAGDSTENYM RKRFREDLFK EDTQPNESGA SGSGGGDDES PNKYSKTGLQ 180 ISKQQQQQQQ QQQDSVTAGS SGLLRPSNIL PATAMWAVAP APTSGTGSTF WMLPVTAGGS 240 GGPSVATATS GAGPSESSHM WTFPAATSGN TLQAPLHFMP RLNFPGSLEF QQGNNSSRGS 300 PLQLGSMLMP QHQQQPSQHL GLGVSESNLG MLAALNAYSR GGLNMNSDHQ QSHALEHHHH 360 HHHHHQQQQQ HQQQPQATDS GDEDPENSQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIITAT GTGTIPANFS TLNVSLRSSG  60
STLSAPPSKS APHSFHGALA LAHHPYHEEG FAHPAFLGFH QHQQQQHQQH LMTADQIAEA  120
LPSGGGGDSG GAGDSTENYM RKRFREDLFK EDTQPNESGA SGSGGGDDES PNKYSKTGLQ  180
ISKQQQQQQQ QQQDSVTAGS SGLLRPSNIL PATAMWAVAP APTSGTGSTF WMLPVTAGGS  240
GGPSVATATS GAGPSESSHM WTFPAATSGN TLQAPLHFMP RLNFPGSLEF QQGNNSSRGS  300
PLQLGSMLMP QHQQQPSQHL GLGVSESNLG MLAALNAYSR GGLNMNSDHQ QSHALEHHHH  360
HHHHHQQQQQ HQQQPQATDS GDEDPENSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023885446.1	0.0	transcription factor TCP8-like
TrEMBL	A0A2N9HI21	1e-179	A0A2N9HI21_FAGSY; Uncharacterized protein
STRING	EOX97160	1e-164	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-56	TCP family protein