PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GRAS

Protein Properties

Length: 719aa MW: 82190.2 Da PI: 4.7254

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.7	2.9e-115	345	716	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 l++lL+ cAeav+++d++ a++ L++++++asp gd +qR+a+yf+++L+ar+a+s+ augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 345 LRTLLTLCAEAVAADDQRTATERLKQIRQHASPVGDGIQRMAHYFANGLQARIAGSG 401 5789*************************************************** PP GRAS 58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114 +++yk + +++ts +++l+a++lf+ ++P++k+ + ++I++ ve+e+r+Hi augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 402 TQIYKVIMTRRTS---AADVLKAYHLFYTAFPFFKVFDFFSSKTIMNLVENETRLHI 455 ***999999...9************************************ PP GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 +Df+i +G+QWp+L+q+L++Rp+gpp+lRiTg++ +e+g ++++eetg+rLa++A augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 456 VDFGILYGFQWPSLIQQLSARPGGPPKLRITGIDFAEPGfrPAQRVEETGRRLANYA 512 *******************************999999************ PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226 e+++vpfefn +a++++++++e+L+++++E+l+Vn++++l++llde+v +es+r+ augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 513 ETFNVPFEFNG-IAQKWDTIQIEDLKLDNNEVLVVNSMYSLKYLLDETVVIESPRNV 568 *******.7**************************************** PP GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 vLkl+++++P+v++ +a h+ + F rf +al ++s+lf++l++ ++re+ er+ augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 569 VLKLIRKMNPHVFIQGVVNAAHGVPFFTSRFRQALFHFSTLFEMLDTYVSRENMERM 625 ***************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +E e g++++nv+aceg er+er et+++W+ r +aGF+++pl+++++++ak augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 626 LLESESYGPQAMNVIACEGLERVERPETYKQWQLRNVRAGFRQLPLNQEMMNTAKDR 682 ***************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + + ++e+s++l++gWk+r+++++S+Wr augustus_masked-scaffold02739-abinit-gene-0.3-mRNA-1 683 VKSRYHKDFDIDEDSQCLLQGWKGRNIFVLSFWR 716 99888************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.623	319	696	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-112	345	716	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
MDHQTLSEFY GSTSVLEVSD EIYTDTESNF VEQNCASFAF WPPDATPSDL TPTSSVKPEV 60 DLHEDYDFSD AVLKYINQML MEEDMEERDY MLQGSEVLEA AEKSLYELLG EKYPPPPDDV 120 QPYYVDQNHE SSDEYYTVNH GDSSRSTSSD NFVIHGWDCD LVKYESSIIA PLSTSEPSYS 180 LLEGTNTIPE TLYGSEFILQ FKRGFEEASK FLPNGDSLVI DWESNAFLVK EQKEESKNTF 240 CKAEKKDGNL YSLDGLRAKN NPHSEDVNLE EGRSSKQSAT STESTVSPEM FDMVLLHSEE 300 DDSVLCEAVL NEKSKNVQPN DRSKRSINVR ANRRKTGGKR GVVDLRTLLT LCAEAVAADD 360 QRTATERLKQ IRQHASPVGD GIQRMAHYFA NGLQARIAGS GTQIYKVIMT RRTSAADVLK 420 AYHLFYTAFP FFKVFDFFSS KTIMNLVENE TRLHIVDFGI LYGFQWPSLI QQLSARPGGP 480 PKLRITGIDF AEPGFRPAQR VEETGRRLAN YAETFNVPFE FNGIAQKWDT IQIEDLKLDN 540 NEVLVVNSMY SLKYLLDETV VIESPRNVVL KLIRKMNPHV FIQGVVNAAH GVPFFTSRFR 600 QALFHFSTLF EMLDTYVSRE NMERMLLESE SYGPQAMNVI ACEGLERVER PETYKQWQLR 660 NVRAGFRQLP LNQEMMNTAK DRVKSRYHKD FDIDEDSQCL LQGWKGRNIF VLSFWRPDC

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

MDHQTLSEFY GSTSVLEVSD EIYTDTESNF VEQNCASFAF WPPDATPSDL TPTSSVKPEV  60
DLHEDYDFSD AVLKYINQML MEEDMEERDY MLQGSEVLEA AEKSLYELLG EKYPPPPDDV  120
QPYYVDQNHE SSDEYYTVNH GDSSRSTSSD NFVIHGWDCD LVKYESSIIA PLSTSEPSYS  180
LLEGTNTIPE TLYGSEFILQ FKRGFEEASK FLPNGDSLVI DWESNAFLVK EQKEESKNTF  240
CKAEKKDGNL YSLDGLRAKN NPHSEDVNLE EGRSSKQSAT STESTVSPEM FDMVLLHSEE  300
DDSVLCEAVL NEKSKNVQPN DRSKRSINVR ANRRKTGGKR GVVDLRTLLT LCAEAVAADD  360
QRTATERLKQ IRQHASPVGD GIQRMAHYFA NGLQARIAGS GTQIYKVIMT RRTSAADVLK  420
AYHLFYTAFP FFKVFDFFSS KTIMNLVENE TRLHIVDFGI LYGFQWPSLI QQLSARPGGP  480
PKLRITGIDF AEPGFRPAQR VEETGRRLAN YAETFNVPFE FNGIAQKWDT IQIEDLKLDN  540
NEVLVVNSMY SLKYLLDETV VIESPRNVVL KLIRKMNPHV FIQGVVNAAH GVPFFTSRFR  600
QALFHFSTLF EMLDTYVSRE NMERMLLESE SYGPQAMNVI ACEGLERVER PETYKQWQLR  660
NVRAGFRQLP LNQEMMNTAK DRVKSRYHKD FDIDEDSQCL LQGWKGRNIF VLSFWRPDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-45	352	717	25	379	Protein SCARECROW
5b3h_D	2e-45	352	717	25	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889824.1	0.0	scarecrow-like protein 14
TrEMBL	A0A2N9ES76	0.0	A0A2N9ES76_FAGSY; Uncharacterized protein
STRING	XP_006486464.1	0.0	(Citrus sinensis)
STRING	XP_006435553.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14