PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 219aa MW: 23380.6 Da PI: 5.0726

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.3	5e-15	60	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+G r +++g+Wv+eIr p r +r++lg+f t+e+Aa+a++ a+++l+g augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1 60 PKYRGAR--SRSGKWVSEIRQP-----RkpTRIWLGTFQTPEMAAAAYDVAALALKG 109 5788885..678*******8.....448**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.08E-16	60	119	No hit	No description
SMART	SM00380	1.1E-26	61	123	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.6E-26	61	118	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-7	61	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.585	61	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-17	61	118	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MANNRANVSQ NDSSTPANVR REETTLTSNI SSSTTTATSS TSVSEGFSGP SGSPSTTQHP 60 KYRGARSRSG KWVSEIRQPR KPTRIWLGTF QTPEMAAAAY DVAALALKGP NTALNFPNLI 120 LSYPIPASMS PSDIRAAAAC AAEDRLHRSS EGSTGQETTY RRRSEEEFVD EDALLNMPNL 180 LVDMAEGMLV SPPRIQSKSS SDESGGDGNG DGDGLWSYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-13	52	118	5	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023916216.1	1e-103	ethylene-responsive transcription factor ERF024-like
Swissprot	Q9FJ90	5e-44	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
Swissprot	Q9SJR0	1e-44	ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBL	A0A2N9IAB4	6e-61	A0A2N9IAB4_FAGSY; Uncharacterized protein
STRING	XP_010278525.1	7e-58	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-37	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]