PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02792-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 211aa    MW: 22345.5 Da    PI: 4.5684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02792-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-1753101356
                                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                           y+G+r  k++g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++aa+++l+g+
  augustus_masked-scaffold02792-abinit-gene-0.6-mRNA-1  53 YRGIR--KRSGKWVSEIREPRK---TTRIWLGTYSSPEMAAAAYDAAALALKGH 101
                                                           99**6..678*********843...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1851109IPR016177DNA-binding domain
CDDcd000182.29E-1551110No hitNo description
PROSITE profilePS5103220.07352108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2652110IPR001471AP2/ERF domain
SMARTSM003802.3E-2752114IPR001471AP2/ERF domain
PfamPF008472.0E-1053101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MASNYNPSDV PQNPNDTPTP TPTPDADATS PRLAQSPGGS LGQPVLSGRH SMYRGIRKRS  60
GKWVSEIREP RKTTRIWLGT YSSPEMAAAA YDAAALALKG HDTALNFPNS RLTYPIPASA  120
SASDIRAAAA SAAEAARVRT ESESSSGGGA QTNVETASRV EDEFIDEEEL LNMPNLLVDM  180
AEGMLMSPPR IESKSSSDES GGGGDNLWSY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-13501091273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916217.13e-89ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ906e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2N9IAB43e-68A0A2N9IAB4_FAGSY; Uncharacterized protein
STRINGVIT_16s0100g00400.t016e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]