PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02910-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ZF-HD

Protein Properties

Length: 257aa MW: 27667.7 Da PI: 7.6641

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02910-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.2	1.4e-31	56	110	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ lGgha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e e augustus_masked-scaffold02910-abinit-gene-0.0-mRNA-1 56 KPRYRECLKNHAVGLGGHALDGCGEFMPA-GAEGTLDALKCAACNCHRNFHRKEGE 110 679***********************9.999******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-22	58	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.2E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.594	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.7E-20	182	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-32	183	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.3E-26	194	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEFEDQEDHD EEMELGGASY DSLGNSGRVK MQSSGGVLAA SGGSGGAEAV TQPSRKPRYR 60 ECLKNHAVGL GGHALDGCGE FMPAGAEGTL DALKCAACNC HRNFHRKEGE GHGGISTSPA 120 SAAAVASGDA YMVPHHHQFS QYYRTPAGYL VATQQRPLAL PSTSGGGGGH SRDEQDDVSN 180 PSGGSGGYVG TASKKRFRTK FTQEQKERMM ELAERLGWRI QKHDEQVVQQ FCNETGVKRH 240 VLKVWMHNNK HTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-26	193	252	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876724.1	1e-161	zinc-finger homeodomain protein 2-like isoform X1
Swissprot	A2YWA6	3e-85	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	3e-85	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A2I4FF48	1e-113	A0A2I4FF48_JUGRE; zinc-finger homeodomain protein 1-like
STRING	EMJ06891	1e-110	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-71	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]