PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02933-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family RAV
Protein Properties Length: 360aa    MW: 41158.4 Da    PI: 7.0757
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02933-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.34.9e-105096254
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                                                          ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  augustus_masked-scaffold02933-abinit-gene-0.4-mRNA-1 50 KFKGVV-PQQNGHWGAQIYA------NhQRVWLGTFKSEKEAAMAYDSAAIKLR 96
                                                          789996.566899****999......44**********99************98 PP
2B387.11.5e-27172276187
                                                           EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEE CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltle 39 
                                                           f+k+ltpsdv+k++rlv+pkk+a ++                  +g+   +++l+++
  augustus_masked-scaffold02933-abinit-gene-0.4-mRNA-1 172 FQKELTPSDVGKLNRLVIPKKYAVRYfpyicesmednaaaaaaaDGNGVDDIELVFY 228
                                                           99******************************99999888888855556999***** PP

                                                           ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                                    B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                                           d+  +sW+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+  +r
  augustus_masked-scaffold02933-abinit-gene-0.4-mRNA-1 229 DKLMKSWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYSCER 276
                                                           ********************************************4443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-2349107No hitNo description
PROSITE profilePS5103217.21450105IPR001471AP2/ERF domain
SMARTSM003808.5E-2050111IPR001471AP2/ERF domain
PfamPF008471.7E-55096IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1650105IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-1550106IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.101.4E-31168277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-26171277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-24171272No hitNo description
PfamPF023624.7E-25172276IPR003340B3 DNA binding domain
SMARTSM010196.2E-20172282IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335172295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEDASSMIS SANKMNATAE TSDSNNTYYT LLGCKRMRHE INNNASSLAK FKGVVPQQNG  60
HWGAQIYANH QRVWLGTFKS EKEAAMAYDS AAIKLRSGDS HRNFPWTERT AQEPEFQNHY  120
STEAVLNMIR DGSYPSKFAA FLRTQSQSKD MGFSLKQTKV HGDGQFSCSQ LFQKELTPSD  180
VGKLNRLVIP KKYAVRYFPY ICESMEDNAA AAAAADGNGV DDIELVFYDK LMKSWKFRYC  240
YWRSSQSFVF TRGWNRFVKE KKLKANDIIT FYSCERGEEA KEGETFCLID VIYNGGESKN  300
CLVEGVNEVQ LELDLNLGKM FTYKMDEEDR KFKEEKILSV LDPIQKVDDK GFRLFGVNIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-281702876108B3 domain-containing transcription factor NGA1
5os9_B7e-281702876108B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886250.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-108RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2N9EEX00.0A0A2N9EEX0_FAGSY; Uncharacterized protein
STRINGXP_009349427.11e-160(Pyrus x bretschneideri)
STRINGXP_009364153.11e-160(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-110RAV family protein