PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 235aa    MW: 25812.4 Da    PI: 8.2216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-183479147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                          +g+W++eEd +l ++v+++G ++W+ I+r++  gR++k+c++rw + 
  augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1 34 KGPWSAEEDRILTRLVERYGARNWSVISRYIK-GRSGKSCRLRWCNQ 79
                                                          79*****************************9.***********985 PP
2Myb_DNA-binding56.85.2e-1888130347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           ++++ Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ 
  augustus_masked-scaffold02939-abinit-gene-0.1-mRNA-1  88 PFSPAEDETILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 130
                                                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2532984IPR017930Myb domain
SuperFamilySSF466891.04E-3131127IPR009057Homeodomain-like
SMARTSM007172.7E-163382IPR001005SANT/Myb domain
PfamPF002493.0E-173479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-243587IPR009057Homeodomain-like
CDDcd001671.12E-143678No hitNo description
SMARTSM007171.3E-1585133IPR001005SANT/Myb domain
PROSITE profilePS5129421.31886135IPR017930Myb domain
CDDcd001676.23E-1288131No hitNo description
PfamPF002491.1E-1488130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2388135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEASSTTSSS DASSSDSSLS SKTPRNHNRP EKIKGPWSAE EDRILTRLVE RYGARNWSVI  60
SRYIKGRSGK SCRLRWCNQL SPNVEHRPFS PAEDETILAA HAQYGNRWAT IARLLPGRTD  120
NAVKNHWNST LKRRVKDQQM IEGGGCCIST NSLINNEGFA SGSLQCNNGF DEDEQFTALT  180
LAPPGIGGGG GGNGGVAERR SESFPTGFWD VMRDVIAREV RDYVSSTLSE NSGFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-413013554159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-413013554159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910903.11e-171transcription factor MYB73-like
SwissprotQ9SN126e-56MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2N9HRH71e-114A0A2N9HRH7_FAGSY; Uncharacterized protein
STRINGEMJ250261e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.18e-58myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]