PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 104aa    MW: 12149.9 Da    PI: 10.6615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-132998175
                                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEE CS
                                                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgry 59
                                                          ffk+ +ps +   + l+lp kf++ehg k   s   tl  ++g +W+v+l  +k  + +
  augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1 29 FFKIILPSTMQDMK-LRLPEKFVREHGDK--LSGVATLAVPNGCTWQVRL--EKANNNI 82
                                                          89999898888887.***********977..6779***************..99999** PP

                                                          EE-TTHHHHHHHHT-- CS
                                                    B3 60 vltkGWkeFvkangLk 75
                                                          ++ +GW++Fv+ + ++
  augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1 83 WFHGGWRDFVEYHSIN 98
                                                          ***********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1826100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1827100IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-1628100No hitNo description
PROSITE profilePS5086311.37828104IPR003340B3 DNA binding domain
PfamPF023621.6E-112998IPR003340B3 DNA binding domain
SMARTSM010193.6E-429104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAPKARTRRS RVGTNWDHHR PSRCIHSHFF KIILPSTMQD MKLRLPEKFV REHGDKLSGV  60
ATLAVPNGCT WQVRLEKANN NIWFHGGWRD FVEYHSINYG YGTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901689.18e-54B3 domain-containing transcription factor VRN1-like
RefseqXP_023901698.18e-54B3 domain-containing transcription factor VRN1-like
RefseqXP_023901705.18e-54B3 domain-containing transcription factor VRN1-like
RefseqXP_023901713.18e-54B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HI642e-41A0A2N9HI64_FAGSY; Uncharacterized protein
STRINGcassava4.1_026645m3e-26(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-22B3 family protein