PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03258-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 175aa    MW: 18670.1 Da    PI: 9.8298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03258-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20959256
                                                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                          +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  augustus_masked-scaffold03258-abinit-gene-0.4-mRNA-1  9 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 59
                                                          69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-22967IPR016177DNA-binding domain
PfamPF008473.1E-13958IPR001471AP2/ERF domain
CDDcd000189.72E-30968No hitNo description
Gene3DG3DSA:3.30.730.107.4E-32966IPR001471AP2/ERF domain
SMARTSM003805.8E-36972IPR001471AP2/ERF domain
PROSITE profilePS5103222.721966IPR001471AP2/ERF domain
PRINTSPR003675.1E-111021IPR001471AP2/ERF domain
PRINTSPR003675.1E-113248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASSAREGHY RGVRKRPWGR YAAEIRDPWK KTRVWLGTFD TPEEAALAYD GAARSLRGAK  60
AKTNFPPTVP ATINGGGGGG LPLPLDLNLP SSNRLVLGEF LHTGVLKDIN CVTTESDSSS  120
SYQVKREPQA SASAVTVASA GPTHHVPESS ATASFLGLVR RGLPVDLNEP PPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22569166ATERF1
3gcc_A4e-22569166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892356.11e-97ethylene-responsive transcription factor 12
SwissprotQ94ID66e-45ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0C5A9S33e-74A0A0C5A9S3_BETPL; ERF5 protein
STRINGEMJ133581e-68(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-44ERF domain protein 12