PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03601-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 261aa    MW: 28273.2 Da    PI: 7.1327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03601-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000385107123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ykC+ C+k F++   L  H  +H
  augustus_masked-scaffold03601-abinit-gene-0.6-mRNA-1  85 YKCSVCNKAFPSYQALGGHKASH 107
                                                           9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.005785107IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.79E-885107No hitNo description
PROSITE profilePS5015710.22185112IPR007087Zinc finger, C2H2
PfamPF139126.5E-1485109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576675.79E-8135162No hitNo description
PfamPF139122.3E-13139164IPR007087Zinc finger, C2H2
SMARTSM003550.18140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328140162IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALEALNSPT TPTPFSFEDM EHQQYPEPWA KKKRSKRPRF ENPTTEEEYL ALCLIMLARG  60
GGDAATTSTT ATTSTSEPPT PKLSYKCSVC NKAFPSYQAL GGHKASHRKS AAESATATAA  120
AAHENNSHHT STSSTSGRTH ECSICHKTFP TGQALGGHKR CHYEGGNSAN TNINTNTNTN  180
SNNTVAAASS SVTFSEGGGS TQSHRDFDLN LPALPDFWID KKISTNIHQL LVEQEVESPL  240
PTKKPRLFLM SQEDMIVSSQ D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891371.11e-142zinc finger protein ZAT10-like
TrEMBLA0A2I4GL571e-104A0A2I4GL57_JUGRE; zinc finger protein ZAT10-like
STRINGVIT_03s0091g00690.t014e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-48salt tolerance zinc finger