PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03676-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TCP
Protein Properties Length: 485aa    MW: 52660.6 Da    PI: 7.9742
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03676-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.4e-37872422134
                                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 
                                                            g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +
  augustus_masked-scaffold03676-abinit-gene-0.2-mRNA-1  87 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADS 143
                                                           689****************************************************** PP

                                                   TCP  59 ikeltgt...................ssssasec...eaesssssasnsssgkaaks 93 
                                                           i el+++                   ++++a ++   e + + + ++n+s++ + ++
  augustus_masked-scaffold03676-abinit-gene-0.2-mRNA-1 144 ISELPSLkspfpdtpkqlsdekrasgGTEQAFDSadlELDGDPNFQQNQSQHLSLSK 200
                                                           *******77776666555555444442222222223222222222234444477788 PP

                                                   TCP  94 aakskksqksaasalnlak.esrakarararertrekmrikn 134
                                                           +a+s+ s++s+ s l+l++ esr +ar+rarer ++++ ++n
  augustus_masked-scaffold03676-abinit-gene-0.2-mRNA-1 201 SACSSTSETSKGSGLSLSRsESRVRARERARERAAKEKEKEN 242
                                                           8899999999999*******************8777666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-4188240IPR005333Transcription factor, TCP
PROSITE profilePS5136931.21389147IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.437220238IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEVDGIQQGQ ACKFPRVGNG RNDSTKLASK GVSDHYPDDE EDGDQLKTLS TTIGGPVGSE  60
TAVANANTNR LRGWHHSSRI IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL  120
QDRLGYDQPS KAVEWLIKAA ADSISELPSL KSPFPDTPKQ LSDEKRASGG TEQAFDSADL  180
ELDGDPNFQQ NQSQHLSLSK SACSSTSETS KGSGLSLSRS ESRVRARERA RERAAKEKEK  240
ENESRIAQNV NHISHNSSSF TELLTGGMNS NANAANHSPT GSAHHNPGGG DQSNLFHKPA  300
RQWTAPTPMD YFDSPLLGPS SSSSRTHHSS GFPGQIHLGN SFPHAMSVFN VSGDNHPELQ  360
QHFPYNVPEH LIPVGAATSQ QPGGSDYNLN FTISSGLAGY NRGTLQSNSP SLLPHHLQRY  420
PTMEAPNLPL FMTSVAAASA AAAPPMENHH HHHHHHQFSP GIDGRLQLCY SDGTRHSDHK  480
GKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2494148155Putative transcription factor PCF6
5zkt_B4e-2494148155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222232RVRARERARER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912863.10.0transcription factor TCP2-like
TrEMBLA0A2N9GS720.0A0A2N9GS72_FAGSY; Uncharacterized protein
STRINGEOY276510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2