PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold03753-abinit-gene-0.8-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 297aa MW: 34174.3 Da PI: 6.5168

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold03753-abinit-gene-0.8-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	195	242	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT+eE++++ + +++ W+ I + ++ ++++ +++s+++++ augustus_masked-scaffold03753-abinit-gene-0.8-mRNA-1 195 SWTEEEEKKFEAILRSTPPPlqkcFWDQIFKIFP-TKSRADLVSYYFNV 242 6*******************************.*********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	8.39E-5	195	242	No hit	No description
SuperFamily	SSF46689	3.28E-5	195	243	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MHPCMYDDQH GSNYNLRERF KCRKKLLSDK TVSQGRACSE SSSASQSELD KNPCTEGMED 60 GLDKYLPGTS DLSTADSAID KYASALEKYV PKRIPYGPRF EANVPEWTGV ASENESDPKW 120 LGTQVWPLEK VEHRYLIERD PIGKGRQDSC GCEVPGSIEC VRFHIAEKRL RVKLELGSAF 180 YRWKFDRMGE EVKISWTEEE EKKFEAILRS TPPPLQKCFW DQIFKIFPTK SRADLVSYYF 240 NVYLLHRRGY QNRVTPNNID SDDEEESGLV TNGNGHEADK SPNSILYSPK KPYANFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023887960.1	0.0	AT-rich interactive domain-containing protein 1 isoform X1
Refseq	XP_023887965.1	0.0	AT-rich interactive domain-containing protein 1 isoform X1
Refseq	XP_023887973.1	0.0	AT-rich interactive domain-containing protein 1 isoform X1
Refseq	XP_023887979.1	0.0	AT-rich interactive domain-containing protein 1 isoform X1
Refseq	XP_023887988.1	0.0	AT-rich interactive domain-containing protein 1 isoform X2
Refseq	XP_023887993.1	0.0	AT-rich interactive domain-containing protein 1 isoform X2
TrEMBL	A0A2N9ENE0	0.0	A0A2N9ENE0_FAGSY; Uncharacterized protein
STRING	XP_008352685.1	1e-116	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4373	17	24