PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 556aa    MW: 61745.5 Da    PI: 6.5875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.14.3e-1081815563374
                                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 
                                                           + ++++A+ +s+g+ + a+++L+rl   ++p+g++ +Rl  y + AL++r+++    
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 181 QCIIDAATNISEGKIQVASEILTRLARFSNPKGNSEERLMNYWVSALKSRVNS---- 233
                                                           67899***********************************************9.... PP

                                                  GRAS  60 lykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege....... 109
                                                           + +  p++e      +e++ +++l++e+sP++k+++++aN aIlea+  e       
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 234 VENPPPVNEL---FKKEHVESTQLLYEMSPCFKLGFMAANLAILEATLDEydtksgn 287
                                                           4433333333...4899999**************************97777777888 PP

                                                  GRAS 110 ....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleet 161
                                                               +++H+iDfdi+qG+Q+  Ll+aL +R++g+   ++iT+v++ e++s+e+l  +
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 288 nshgNKIHVIDFDIGQGGQYEHLLHALKARRNGKSfIVKITAVVA-ENSSQERLAMV 343
                                                           889999*********************9888666659********.7789******* PP

                                                  GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                                           ++ L+++Aee+gv f f+v++  rl +l+ e+L ++p+E+l+Vn++++l+r+ desv
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 344 RRALSQLAEEVGVCFTFHVVMILRLGELTRESLGCEPDESLVVNFAFKLYRMADESV 400
                                                           ********************************************************* PP

                                                  GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                                                           s++++rde+L+ vk+l P+vv++veqe+++n+++F++r++e+++yy alfds+ea++
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 401 STDNPRDELLRRVKGLGPRVVILVEQEMNTNTAPFMARVTETCSYYGALFDSFEATM 457
                                                           ********************************************************* PP

                                                  GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                                            r+++er+k+E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+k
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 458 KRDTSERVKIEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSQK 513
                                                           *************.******************************************* PP

                                                  GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           + ++ k+ l +   + g++v +++g ++ gW++r+L+++SaWr
  augustus_masked-scaffold03933-abinit-gene-0.5-mRNA-1 514 VSETLKAKLTENRvNPGFTVTDQNGGVCVGWMGRTLTVASAWR 556
                                                           *************99***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.917153535IPR005202Transcription factor GRAS
PfamPF035141.5E-105181556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MLIGKRTLSD YQAHQFQNQP GFNGFFHRSV KPRTFHHTSP IDYSALPILQ QFRPQPISIG  60
NRIVTTNNNN NNNANTNTQA LPGVPCVSTT SSSHVSEQKI MNDRLQELEK QLLDDDDDDA  120
NEEENDAVSV ITNANSEWSE TIQNLISPTS QKPPISLSPT SSSSSSSSSS VASPSSTCSK  180
QCIIDAATNI SEGKIQVASE ILTRLARFSN PKGNSEERLM NYWVSALKSR VNSVENPPPV  240
NELFKKEHVE STQLLYEMSP CFKLGFMAAN LAILEATLDE YDTKSGNNSH GNKIHVIDFD  300
IGQGGQYEHL LHALKARRNG KSFIVKITAV VAENSSQERL AMVRRALSQL AEEVGVCFTF  360
HVVMILRLGE LTRESLGCEP DESLVVNFAF KLYRMADESV STDNPRDELL RRVKGLGPRV  420
VILVEQEMNT NTAPFMARVT ETCSYYGALF DSFEATMKRD TSERVKIEEG LSRKLGNSVA  480
CEGRDRVERC EVFGKWRARM GMAGFELKPL SQKVSETLKA KLTENRVNPG FTVTDQNGGV  540
CVGWMGRTLT VASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-4121355637375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899994.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-176SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2N9G5Q50.0A0A2N9G5Q5_FAGSY; Uncharacterized protein
STRINGEOY232800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-162SCARECROW-like 8