PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 620aa    MW: 68951.3 Da    PI: 6.0758
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.69.8e-1002556193374
                                                  GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 
                                                           ++L++ Ae +++g++  laq++Larl+++ sp g+p+qR+a+yf+eAL+  l+++ +
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 255 DQLYQLAELIETGNNPvLAQEILARLNHQLSPIGKPFQRAAFYFKEALQLLLHNTNN 311
                                                           79**********87766************************************9444 PP

                                                  GRAS  59 ely.kal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervH 113
                                                           + + ++l  +s+ ++ + + ++ a+k fsevsP+l+f+++t+Nqa+lea++g +++H
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 312 TNSnASLnMSSPPPPISLIFKIGAYKSFSEVSPVLQFANFTCNQALLEALDGFDTIH 368
                                                           44303442444555566**************************************** PP

                                                  GRAS 114 iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                                           iiDfdi+ G+QW++L+q+La +++g p l+iT+++s++++++ +l  t e+L++fA+
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 369 IIDFDIGFGGQWASLMQELALKQGGGPALKITAFASSSTHDELQLGFTLENLKHFAT 425
                                                           **************************************99***************** PP

                                                  GRAS 171 elgvpfefnvlvakrledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           e+++ fef++l  ++l++ + +  L++++ Ea+aVnl +  ++ +  ++sl+     
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 426 EINLAFEFEFLSFESLNSGSwPLPLHTSESEAIAVNLPIGSFSNY--PLSLPL---- 476
                                                           **********9666666653256789999**********877776..777777.... PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           vL +vk+lsPk+vv  ++ +d+++ +F  ++++a++ ys l++sl+a    + ++ +
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 477 VLGFVKQLSPKIVVSLDRGCDRTDLPFPLHIIHAVQSYSGLLESLDAV-NVNLDALQ 532
                                                           *********************************************665.3566999* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           k+Er+ll++ i+++v  + ++      +   Wr  + ++GF+p+++s+++++qa++l
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 533 KIERHLLQPGIEKIVLGRRRS----SDRTPPWRGLFLSSGFSPLTFSNFTESQAECL 585
                                                           ***************988777....77789*************************** PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           +++++++g++ve+++ slvl+W++++Lvs+S+Wr
  augustus_masked-scaffold04011-abinit-gene-0.1-mRNA-1 586 VQRTPVRGFHVEKKQTSLVLCWQRKELVSASVWR 619
                                                           *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.468227599IPR005202Transcription factor GRAS
PfamPF035143.4E-97255619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MEDWEGVLSD SSSGQEQSIL RLIMGDIEDP SLGLNKLLHQ DLEFNSGFGM IDQAAGFGCL  60
EMPNNLLPSI DPSAEFAFNG GGTNATRLGS VSTPNHSPMF SVATSNNLLP GSLSHSPAMF  120
HHQQQQQQVQ TIETVDEKPQ IFNPQMTHPN QAQYAQNPAL FMPLTYAQLQ EHHLGSSPLA  180
KRHNLGGIGP NYQVPKSPFL EPGQELLRRQ QQQQQNQLQV LPQHIQQRPM MVSKQKMVCN  240
ELANQQQQQQ QFLFDQLYQL AELIETGNNP VLAQEILARL NHQLSPIGKP FQRAAFYFKE  300
ALQLLLHNTN NTNSNASLNM SSPPPPISLI FKIGAYKSFS EVSPVLQFAN FTCNQALLEA  360
LDGFDTIHII DFDIGFGGQW ASLMQELALK QGGGPALKIT AFASSSTHDE LQLGFTLENL  420
KHFATEINLA FEFEFLSFES LNSGSWPLPL HTSESEAIAV NLPIGSFSNY PLSLPLVLGF  480
VKQLSPKIVV SLDRGCDRTD LPFPLHIIHA VQSYSGLLES LDAVNVNLDA LQKIERHLLQ  540
PGIEKIVLGR RRSSDRTPPW RGLFLSSGFS PLTFSNFTES QAECLVQRTP VRGFHVEKKQ  600
TSLVLCWQRK ELVSASVWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3025961825378Protein SCARECROW
5b3h_A5e-3025961824377Protein SCARECROW
5b3h_D5e-3025961824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908708.10.0scarecrow-like protein 22
SwissprotO813161e-148SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2I4ELR60.0A0A2I4ELR6_JUGRE; scarecrow-like protein 27
STRINGEOX962960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-124GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]