PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 623aa    MW: 69503.3 Da    PI: 5.8927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.84.7e-972586223374
                                                  GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlar.sv 57 
                                                           ++L++ Ae +++g++  +aq +Larl+++ sp g+p+qR+a+yf+eAL+  l + + 
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 258 DQLYQLAELIETGNNPvRAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLRNtNN 314
                                                           79**********87766***********************************99556 PP

                                                  GRAS  58 selykal..ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                                                           +++ ++l  ++ + ++ + + ++ a+k fsevsP+l+f+++t+Nqa+lea++g +++
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 315 TNCNASLslSSPPPPPISLIFKIGAYKSFSEVSPVLQFANFTCNQALLEALDGFDTI 371
                                                           6666666223444444559************************************** PP

                                                  GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                                            iiDfdi+ G+QW++L+q+La ++++ p l+iT+++sp+++++ el  t+e+L++fA
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 372 RIIDFDIGFGGQWASLMQELALKQGDGPALKITAFVSPSTHDELELGLTQENLKHFA 428
                                                           ********************************************************* PP

                                                  GRAS 170 eelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                                           +e+++ fef++l  ++l++   +  L+v++ Ea+aVnl +  ++    ++sl+    
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 429 TEINLAFEFQFLSLESLNSGsWPLPLHVSESEAIAVNLPIGSFSNC--PLSLPL--- 480
                                                           ***********966666665236679**************777665..777777... PP

                                                  GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                            +L +vk+lsPk+vv  ++ +d ++ +F +++++a++ ys l++sl+a    + ++ 
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 481 -ILGFVKQLSPKIVVSLDRGCDQTDVPFPDHVIHAVQSYSGLLESLDAV-NVNLDAL 535
                                                           .*********************************************665.3566999 PP

                                                  GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                                           +k+Er +l++ i+++v  + +       ++  Wr+ + ++GF+p+++s+++++qa++
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 536 QKIERYFLQPGIEKIVLGRRSP-----DRMPPWRSLFLSSGFSPLTFSNFTESQAEC 587
                                                           ****************998887.....8899************************** PP

                                                  GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           ll++++++g++ve+++ +lvl W++++L+s+S+Wr
  augustus_masked-scaffold04011-abinit-gene-0.3-mRNA-1 588 LLQRTPVRGFHVEKKQTALVLFWQRKELISASVWR 622
                                                           **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.945230602IPR005202Transcription factor GRAS
PfamPF035141.6E-94258622IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEDWEGVLSE SSSGQDKSIM RLIMGDIEDP PLGLNKLLHQ DIEFNSGFGM IDQAATFGCL  60
EMSTNLLPSI DPSADFPFNG GGTNAARLGS VSTPNHNPMF SVATSNNLLP VSLSHLPAVF  120
HHHQQQQQQQ VQTIEDLDEK PQIFNPPMMQ QNQALSSQNP ALFMPLTYAQ LQEHHLISPP  180
LAKRHNLGGI EPNYQVPKLP FSEPGQELLR RQQQQQQNQL QMLPQHIQQK PMMVSKQKMV  240
CNELASQQQQ HAHQLLFDQL YQLAELIETG NNPVRAQGIL ARLNHQLSPI GKPFQRAAFY  300
FKEALQLLLR NTNNTNCNAS LSLSSPPPPP ISLIFKIGAY KSFSEVSPVL QFANFTCNQA  360
LLEALDGFDT IRIIDFDIGF GGQWASLMQE LALKQGDGPA LKITAFVSPS THDELELGLT  420
QENLKHFATE INLAFEFQFL SLESLNSGSW PLPLHVSESE AIAVNLPIGS FSNCPLSLPL  480
ILGFVKQLSP KIVVSLDRGC DQTDVPFPDH VIHAVQSYSG LLESLDAVNV NLDALQKIER  540
YFLQPGIEKI VLGRRSPDRM PPWRSLFLSS GFSPLTFSNF TESQAECLLQ RTPVRGFHVE  600
KKQTALVLFW QRKELISASV WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2926962215375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-37AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908700.10.0scarecrow-like protein 6
SwissprotO813161e-144SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2I4HCD60.0A0A2I4HCD6_JUGRE; scarecrow-like protein 22
STRINGEOX962960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]