PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04045-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 196aa    MW: 21497.3 Da    PI: 9.0751
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04045-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26078.41.2e-24219922100
                                                DUF260  22 fpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                                           f +  + kfanvh +FGasnv kll++l++ +reda++sl+yeAear++dPvyG+vg
  augustus_masked-scaffold04045-abinit-gene-0.0-mRNA-1  21 FSSGPAPKFANVHNVFGASNVAKLLNELNPVQREDAVNSLAYEAEARLSDPVYGCVG 77 
                                                           66666789************************************************* PP

                                                DUF260  79 vilklqqqleqlkaelallkee 100
                                                           +i+ lq +l+q + +l  +k+e
  augustus_masked-scaffold04045-abinit-gene-0.0-mRNA-1  78 IISILQFKLKQIQINLYNAKQE 99 
                                                           *************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.8681100IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-232097IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRSMQAPKAK VHARLRVCTV FSSGPAPKFA NVHNVFGASN VAKLLNELNP VQREDAVNSL  60
AYEAEARLSD PVYGCVGIIS ILQFKLKQIQ INLYNAKQEL ARFSSGQAIH PTLYAPGFNT  120
GFDPPANLGS INPNEYNQRN DAAAAMSPLA LGTFENPYPI QTQVAEPLHH LQPQPLQQGQ  180
QSQPQQHKLE SKEGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-312810739118LOB family transfactor Ramosa2.1
5ly0_B9e-312810739118LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904594.18e-57protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FKZ36e-33LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A067KA721e-39A0A067KA72_JATCU; Uncharacterized protein
STRINGcassava4.1_029920m2e-38(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.15e-35ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]