PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04345-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 251aa    MW: 27231.9 Da    PI: 6.0378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04345-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1879128255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                            y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  augustus_masked-scaffold04345-abinit-gene-0.0-mRNA-1  79 TYRGVRIRQ-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 128
                                                           69****888.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-3179137IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2179137IPR016177DNA-binding domain
PfamPF008474.3E-1279128IPR001471AP2/ERF domain
PROSITE profilePS5103223.11779136IPR001471AP2/ERF domain
SMARTSM003807.6E-3579142IPR001471AP2/ERF domain
CDDcd000181.02E-3180138No hitNo description
PRINTSPR003677.8E-108091IPR001471AP2/ERF domain
PRINTSPR003677.8E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEESSNLECE AKTTSTSSSS SSNSNTSTST SSSSSSSPNS TNVSTENRAQ KSCKRGHEAK  60
NGDESRKKPK NGDDGKHPTY RGVRIRQWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD  120
VAALTIKGQS AFLNFPELAQ VLPRPASSSP KDIQAAAAQA AAMNFPGSQE VEPELAPHSP  180
SSTMASHDTR DSSTSTLTDK DDAFLGLPDL LIGVNSQIDE FCYSSTWQLI NGAEPVDTCL  240
RLEEPFLWGC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18771361272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887704.11e-147ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2N9F0E71e-115A0A2N9F0E7_FAGSY; Uncharacterized protein
STRINGEOY242811e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]