PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04358-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 254aa    MW: 28496 Da    PI: 6.9078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04358-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161461148
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                          +g WT+ Ed+ll d++k +G g W  I+++ g++R++k+c++rw++yl
  augustus_masked-scaffold04358-abinit-gene-0.3-mRNA-1 14 KGTWTALEDQLLTDYIKTHGEGKWGNIPKETGLKRCGKSCRLRWLNYL 61
                                                          799*******************************************97 PP
2Myb_DNA-binding491.4e-1567111147
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  augustus_masked-scaffold04358-abinit-gene-0.3-mRNA-1  67 RGNISVDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
                                                           788999****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.617961IPR017930Myb domain
SuperFamilySSF466891.34E-2812108IPR009057Homeodomain-like
SMARTSM007175.2E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-221568IPR009057Homeodomain-like
CDDcd001675.57E-101661No hitNo description
PROSITE profilePS5129424.16862116IPR017930Myb domain
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PfamPF002495.3E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2369116IPR009057Homeodomain-like
CDDcd001672.43E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRSPCCTRE GLNKGTWTAL EDQLLTDYIK THGEGKWGNI PKETGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SVDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLGKKVKGEQ  120
SKHSIEEKQK TKTKLTNKSP TLKSSSAIGT KASSCREVLV APPTPKVENP ETDLAPATSV  180
DEDSSNLAAN TSEENNAHNF DIEIDFNVEK AFLSDIWDSD FWKQCQSEFE NGIMEGGGSV  240
GAKNFSFYEE ILKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899956.11e-172transcription factor MYB8-like
TrEMBLA0A061GJG13e-92A0A061GJG1_THECC; Transcription factor MYB558, putative
STRINGEOY300304e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-61myb domain protein 6