PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold04542-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 252aa MW: 26882.3 Da PI: 5.7848

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold04542-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43	1.1e-13	86	134	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G ++++g+Wv+eIr p+ r +r++lg++ t e+Aa a++ a+++l+g augustus_masked-scaffold04542-abinit-gene-0.2-mRNA-1 86 KYRGA--RSRSGKWVSEIRQPR----RsTRIWLGTYPTREMAAVAYDVAALALKG 134 67777..4678*******83....36**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.04E-25	85	144	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.0E-25	86	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.862	86	142	IPR001471	AP2/ERF domain
SMART	SM00380	8.7E-26	86	148	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-17	86	143	IPR016177	DNA-binding domain
Pfam	PF00847	3.8E-8	91	134	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MPKNPANVRG NNPSTHTNVR REETTLNSDT TGAIPASSSL TNNTNTNTNT NTNTATATAT 60 ATSPISESEG SSGQSGSSSS TANPKKYRGA RSRSGKWVSE IRQPRRSTRI WLGTYPTREM 120 AAVAYDVAAL ALKGPSTVLN FPNLMLWYPI PASLAPSDIR AAAASAAEAM MQRSTEGSSS 180 SSSSRTDHET AHRKRTEEEY VDEEELLNMP NLLVEMAEGM LLSPPRIQSK SSSDESGGDG 240 NGDGDGLWSY AY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-12	75	143	3	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023916188.1	1e-102	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-43	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2I4EMW5	1e-59	A0A2I4EMW5_JUGRE; ethylene-responsive transcription factor ERF027-like
STRING	VIT_16s0100g00400.t01	5e-53	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-26	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]