PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04681-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 177aa    MW: 19592.7 Da    PI: 8.2938
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04681-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.81.3e-281059557
                                           ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                                           Y+eCl+NhAaslG++a+DGCgEf+ +   +++  +l+CaACgCHRnFHR+ +
  augustus_masked-scaffold04681-abinit-gene-0.0-mRNA-1 10 IYRECLRNHAASLGSYATDGCGEFTLD---DTSHGSLQCAACGCHRNFHRKVT 59
                                                          7*************************8...56789***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-231059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.9021158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-171157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-231157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.82E-1692160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-2992162IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-28102160IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQGDNNTNDI YRECLRNHAA SLGSYATDGC GEFTLDDTSH GSLQCAACGC HRNFHRKVTY  60
VPPHGRGLVL SCTSRDPSAD TTTADLMDYS GGSELGERSS SKKRFRTKFT PDQKEKMLAF  120
AEKLGWKLQR KDLEDEIERF CRGVGVSRQV FKVWMHNHKN SSSSSSASTG NASSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-231031651879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908039.11e-130zinc-finger homeodomain protein 10-like
TrEMBLA0A2N9I0P11e-107A0A2N9I0P1_FAGSY; Uncharacterized protein
STRINGPOPTR_0012s03770.17e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-39homeobox protein 31