PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 260aa    MW: 28075.2 Da    PI: 5.4465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191459147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                          +g+WT++Ed  l ++v+q+G+++W++I++ ++ gR++k+c++rw + 
  augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1 14 KGSWTPQEDATLMKLVEQHGPRNWSLISQGIP-GRSGKSCRLRWCNQ 59
                                                          799*****************************.***********985 PP
2Myb_DNA-binding53.26.8e-1768110347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           ++T+ Ed ++ +a++ +G++ W+tIar ++ gRt++ +k++w++ 
  augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1  68 PFTPAEDAIIFQAHAVHGNR-WATIARLLP-GRTDNAIKNHWNST 110
                                                           89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.809960IPR017930Myb domain
SuperFamilySSF466896.74E-3112107IPR009057Homeodomain-like
SMARTSM007171.0E-151362IPR001005SANT/Myb domain
PfamPF002499.5E-191459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-251567IPR009057Homeodomain-like
CDDcd001673.50E-151658No hitNo description
PROSITE profilePS5129425.13561115IPR017930Myb domain
SMARTSM007176.8E-1565113IPR001005SANT/Myb domain
PfamPF002494.7E-1468110IPR001005SANT/Myb domain
CDDcd001679.64E-1368111No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2368114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVMKMENGGG DRIKGSWTPQ EDATLMKLVE QHGPRNWSLI SQGIPGRSGK SCRLRWCNQL  60
SPTVQHRPFT PAEDAIIFQA HAVHGNRWAT IARLLPGRTD NAIKNHWNST LRRRRGGNGS  120
ELESASSESN SVVKRSDAGS SDSDSGLKRQ RLMGGGTGGW PEENSNLVVG PQTSLTLSLP  180
GGGGGGGGES VIALPAVDEK MKVTVEEENE EEEEEEEEEE TCLVTIMQKM IAAEVRNYMD  240
TLRSKNGPGP DCGPPAQKGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-40131143104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903740.11e-145transcription factor MYB77-like
SwissprotQ9SN121e-57MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2N9IWI21e-100A0A2N9IWI2_FAGSY; Uncharacterized protein
STRINGVIT_13s0067g01360.t018e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-53myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]