PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YB

Protein Properties

Length: 201aa MW: 22922.6 Da PI: 6.6315

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.1	9.4e-57	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrek 58 +eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrek augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1 33 KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREK 89 89***************************************************** PP NF-YB 59 rktingddllwalatlGfedyveplkvylkkyrelegek 97 rktingdd++wa++tlGfedyv plk+yl+kyre+egek augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1 90 RKTINGDDIIWAITTLGFEDYVTPLKTYLQKYREIEGEK 128 **********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-53	28	150	IPR009072	Histone-fold
SuperFamily	SSF47113	6.79E-41	35	152	IPR009072	Histone-fold
Pfam	PF00808	8.5E-28	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-19	66	84	No hit	No description
PROSITE pattern	PS00685	0	69	85	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-19	85	103	No hit	No description
PRINTS	PR00615	1.2E-19	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEDESHGYGS HGPSVGSPES PRLKNSTSSS HNKEQDRFLP IANVGRIMKK VIPANGKISK 60 DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW AITTLGFEDY VTPLKTYLQK 120 YREIEGEKLN IPKQQRSEQR LHQHQHEQEQ NIPYNTLYTS TSLMPQPSFM ATDQPFPLPF 180 STNSIQKQLQ PQDQMDSVGH W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	7e-45	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-45	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919153.1	1e-147	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-71	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A1Q3BA57	1e-105	A0A1Q3BA57_CEPFO; CBFD_NFYB_HMF domain-containing protein
STRING	GLYMA05G32680.1	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	8e-72	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]