PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04974-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8838.29 Da    PI: 10.7051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04974-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.21.9e-322474151
                                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++
  augustus_masked-scaffold04974-abinit-gene-0.2-mRNA-1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 74
                                                          79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3751676IPR002100Transcription factor, MADS-box
CDDcd002652.00E-391775No hitNo description
SuperFamilySSF554555.1E-301775IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-341838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.6E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-343853IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-345374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MVYPNQSMSL SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-211674159Myocyte-specific enhancer factor 2B
1tqe_Q5e-211674159Myocyte-specific enhancer factor 2B
1tqe_R5e-211674159Myocyte-specific enhancer factor 2B
1tqe_S5e-211674159Myocyte-specific enhancer factor 2B
6c9l_A5e-211674159Myocyte-specific enhancer factor 2B
6c9l_B5e-211674159Myocyte-specific enhancer factor 2B
6c9l_C5e-211674159Myocyte-specific enhancer factor 2B
6c9l_D5e-211674159Myocyte-specific enhancer factor 2B
6c9l_E5e-211674159Myocyte-specific enhancer factor 2B
6c9l_F5e-211674159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1482941e-102DQ148294.1 Castanea mollissima agamous-like MADS box 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894634.12e-48floral homeotic protein AGAMOUS isoform X1
RefseqXP_023894705.12e-48floral homeotic protein AGAMOUS isoform X2
RefseqXP_023894765.12e-48floral homeotic protein AGAMOUS isoform X3
RefseqXP_023894825.12e-48floral homeotic protein AGAMOUS isoform X4
RefseqXP_023894891.12e-48floral homeotic protein AGAMOUS isoform X5
SwissprotQ408722e-43AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLQ3YAG24e-46Q3YAG2_9ROSI; Agamous-like MADS box 2
STRINGXP_007147970.13e-44(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.21e-30MIKC_MADS family protein