PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04997-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 233aa    MW: 25670.6 Da    PI: 5.3423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04997-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184089255
                                                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                                            ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t +eAa a++aa+ kl+g
  augustus_masked-scaffold04997-abinit-gene-0.10-mRNA-1 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSQEAAMAYDAAAGKLYG 89
                                                           69****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-203999No hitNo description
Gene3DG3DSA:3.30.730.101.3E-294098IPR001471AP2/ERF domain
PROSITE profilePS5103222.1684097IPR001471AP2/ERF domain
PfamPF008478.2E-144089IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-214098IPR016177DNA-binding domain
SMARTSM003801.4E-3340103IPR001471AP2/ERF domain
PRINTSPR003673.6E-104152IPR001471AP2/ERF domain
PRINTSPR003673.6E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLKSGTASPE EKKQAKRSAQ ASSRKGCMRG KGGPENAMCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSQEAAMAY DAAAGKLYGT AAKLNLPDVT LNSQHPATSI DTQINPMETH  120
PQGVHNSGIL CSSNNSPIVK VDDFTSQPYQ NDSFMSFPNG YVESNEKQKE NIVKFGENKE  180
IDGFWDNMNA NFPVFDETIW TEAAMSLDFD SGIFPGNLAD GSGWDALHSP WCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873527.11e-151dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2N9IGX51e-116A0A2N9IGX5_FAGSY; Uncharacterized protein
STRINGGorai.009G197800.18e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-53ERF family protein