PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold05080-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 233aa MW: 23720.1 Da PI: 8.1305

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold05080-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	26	84	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprCdst tkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk + augustus_masked-scaffold05080-abinit-gene-0.0-mRNA-1 26 AQPLPCPRCDSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGTRKAAMT 84 57899**************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.9E-33	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-20	33	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MPSETSEGKP VTRVHQSLGH PPPPQAQPLP CPRCDSTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGGTLR NVPVGGGTRK AAMTKRNRSA TCSSTSSSSS SSSSTATNGN DAVLGNHPAA 120 AAATASGLHA ENMDLGGGSF NFLLNSQGPS LLGLSGYGLG LGPIPGFDEM GFGLGRGTWT 180 FPEVGDFGGG GSGNGADVAS LGFNTWQING AEAGGLADSS AAAGDSIPGQ GLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921302.1	3e-97	dof zinc finger protein DOF1.6-like
TrEMBL	A0A2N9IV94	3e-66	A0A2N9IV94_FAGSY; Uncharacterized protein
STRING	VIT_18s0001g11310.t01	4e-59	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	5e-28	DOF zinc finger protein 2