PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05234-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 405aa    MW: 46656.6 Da    PI: 6.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05234-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027151174123
                                                           EEETTTTEEESSHHHHHHHHHH.T CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                                           y C+ Cg+ ++++ +Lk+H +  H
  augustus_masked-scaffold05234-abinit-gene-0.6-mRNA-1 151 YICKVCGRKCKTNLDLKKHFKQlH 174
                                                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.9E-672124IPR029060PIN domain-like
PROSITE profilePS5015710.824151179IPR007087Zinc finger, C2H2
SMARTSM003550.0072151174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153174IPR007087Zinc finger, C2H2
CDDcd061671.45E-12163305No hitNo description
Gene3DG3DSA:3.40.50.10105.9E-6226301IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNTISPSLLF LHKPFLTHPI NLNNNNPKLS PRRFQTKCSA SASASTSTST SNGAVYEIDM  60
VKNKQGIYTP KQKKVVVLWD LDNKPPRGPP YNAAMSLKQL AQRFGDVIDM SAYANRHAFI  120
HLPQWVVQQR RDRKEVDFFE RKGLITPSDP YICKVCGRKC KTNLDLKKHF KQLHERERQK  180
KLNRMRSLKG KKRQRFKERF INGNDKYNEA ARDLVTPKVG YGLASELRRA GVFVKTVEDK  240
PQAADWALKK QMQHSMSRGV DWLFLVSDDS DFSDMLRRAR EANLGTVVVG DWDRALGRHA  300
DLWVPWVRVE KGEVGEKDLL RKEKRTGSEF LDREDELFSV SSLDENAGWN EIDLDSVVDE  360
IVAARTEVNG VRISAFDEGE EEEEDEDGEV DLLWDSEDEE DDEYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876314.10.0uncharacterized protein LOC111988758
TrEMBLA0A2N9H6H60.0A0A2N9H6H6_FAGSY; Uncharacterized protein
STRINGEMJ239020.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-151C2H2-like zinc finger protein