PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05635-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 366aa    MW: 40692.5 Da    PI: 5.0326
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05635-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31178236259
                                                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
                                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                                                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+geHn
  augustus_masked-scaffold05635-abinit-gene-0.1-mRNA-1 178 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNKTDPGMFIVTYTGEHN 234
                                                           79*************************998*************************** PP

                                                           S- CS
                                                  WRKY  58 he 59 
                                                           h+
  augustus_masked-scaffold05635-abinit-gene-0.1-mRNA-1 235 HP 236
                                                           *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.762172238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-31173238IPR003657WRKY domain
SuperFamilySSF1182901.7E-26175238IPR003657WRKY domain
SMARTSM007741.2E-37177237IPR003657WRKY domain
PfamPF031063.2E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEEDWDLQAV VRGCVSTASR TSSSTAAATT TASTSFMSDF HYSNINNSYF SGSVGEQLGL  60
GQGQLFSFSD PFEARRHVSE DLDLHELCKP FFPKSEPLSP QLSPLTSFSN SLSSFTESKP  120
QIQQQQQQQK QHQHQVQQQQ QKQQTKQSQS GSASNPKSKR RKNLLKKVCH VPAEGLSSDI  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCL ARKQVERNKT DPGMFIVTYT GEHNHPAPTH  240
RNSLAGSTRQ KPLTPQNVTA GDPNKAQKQY SSPETSFEED LVVPQTQSTT TDSKEEEEEE  300
EREDLVEEDD EEGDEFGISD MVLNDDFFMG LDGFAGPGTG DYFPDIFPAS FAPISNCSNW  360
VANNAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22165239580Disease resistance protein RRS1
5w3x_D1e-22165239580Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871123.10.0WRKY transcription factor 22
TrEMBLA0A2N9IZA31e-141A0A2N9IZA3_FAGSY; Uncharacterized protein
STRINGEOX958621e-117(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-66WRKY family protein