PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 243aa    MW: 27247.1 Da    PI: 8.0244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-1271123155
                                                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                           ++++h e+Er+RR+++ + +  Lr+ lP  +   ++K s ++   +A +YIk+L+
  augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1  71 QKMMHREIERQRRQEMATLYVALRSFLPLEF--IKGKRSISDHINEAANYIKHLE 123
                                                           6899*************************65..********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.64E-1168127No hitNo description
SuperFamilySSF474594.97E-1469138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.15470122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-971123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1072137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-476128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFPLHQSNEL VFKVFADPHH QHKISQDLIM GQASLDGSDF NTSKSMGKGL RRKLCDNLDK  60
NFVNCNDNKK QKMMHREIER QRRQEMATLY VALRSFLPLE FIKGKRSISD HINEAANYIK  120
HLEKQIKELS SARDVLKGFS NLSTTDQGQG STSQPSCFTI HPCCGGVEIV ISSGFREESF  180
PLSKVLELLL EGGLTVLNCT SSKVNERFLH TVQCEGSDST CLDLSGLQKK LNEVIPSMNS  240
LSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15071RRKLCDNLDKNFVNCNDNKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910969.11e-138transcription factor bHLH36-like
SwissprotQ9STJ66e-45BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A2N9EAZ41e-107A0A2N9EAZ4_FAGSY; Uncharacterized protein
STRINGXP_008234326.15e-79(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.19e-41bHLH family protein