PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold06199-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 251aa MW: 28335.9 Da PI: 7.7425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold06199-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H augustus_masked-scaffold06199-abinit-gene-0.2-mRNA-1 78 FPCKYCSKKFSNSQALGGHQNAH 100 89******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.58E-6	75	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-4	78	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.946	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSERISCSNV DSQGKAEVEL PMEVELDQLL DLRLSNSVVD GHASKVANNL LDGFDKKSPN 60 SQEEPEPFNE VKEKKQYFPC KYCSKKFSNS QALGGHQNAH KHERAFLKRM VSLDCHLNKY 120 YSPMPTLPHL HHESLTRALG VNMRSMIHKP FHSRPHAGVW YGKEVWSKPL YGVHHLGMDD 180 YWVAGSGFQP RDMMGVNLRD AINDFEHSSL VSNSSGSVAT NRIASLWDFQ GNSFSRNQQL 240 KAPGLDLSLN L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023892767.1	1e-178	zinc finger protein GIS-like
Refseq	XP_023892770.1	1e-178	zinc finger protein GIS-like
TrEMBL	A0A2N9EZC2	2e-93	A0A2N9EZC2_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17475	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-15	C2H2 family protein