PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06584-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 197aa    MW: 22503.6 Da    PI: 9.723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06584-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.81.6e-11175196122
                                                           ---SS-EEEEEEE--TT-SS-E CS
                                                  WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                                           ldDgy+WrKYGqK+vkg+++pr
  augustus_masked-scaffold06584-abinit-gene-0.2-mRNA-1 175 LDDGYRWRKYGQKVVKGNPHPR 196
                                                           59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF009161.1E-10850IPR011547SLC26A/SulP transporter domain
Gene3DG3DSA:2.20.25.807.5E-13161196IPR003657WRKY domain
SuperFamilySSF1182907.19E-10167197IPR003657WRKY domain
PROSITE profilePS5081115.663170197IPR003657WRKY domain
PfamPF031062.0E-7176196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008272Biological Processsulfate transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015116Molecular Functionsulfate transmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKMKKRKEGI AVGRTFATLK DYQVDGNKEM IAIGLMNVVG SSTSCYVTIS EASAPTGADP  60
IAMMEFYTKA AQEEKFKHLN NQKMKCHHQL LFKNHRRRDR ELHSYWSHAL RQQSEEEGDA  120
ETREEGGGDE PNPKRRHVPN LLLMTDAGTS EVPLSHKTIT EPKIIVQTRS GVDLLDDGYR  180
WRKYGQKVVK GNPHPRW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6757082e-43JN675708.1 Prunus salicina WRKY domain class transcription factor mRNA, complete cds.
GenBankKF2635602e-43KF263560.1 Prunus avium tetraploid rootstock Y1 WRKY domain class transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004304267.13e-32(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2502423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-22WRKY DNA-binding protein 3