PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07019-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 353aa    MW: 39113 Da    PI: 7.3334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07019-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                                                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                                          +g+W++eEd  l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  augustus_masked-scaffold07019-abinit-gene-0.0-mRNA-1 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                                          79*********************************************97 PP
2Myb_DNA-binding35.42.5e-1169111246
                                                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                           g +++eE+ ++  +    G++ W+ Ia  ++ gRt++++k++w++
  augustus_masked-scaffold07019-abinit-gene-0.0-mRNA-1  69 GGFSEEEENIICSLYVSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                                                           569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.563962IPR017930Myb domain
SuperFamilySSF466891.92E-2511109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002492.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231569IPR009057Homeodomain-like
CDDcd001671.40E-81662No hitNo description
PROSITE profilePS5129420.6763117IPR017930Myb domain
SMARTSM007176.6E-1067115IPR001005SANT/Myb domain
PfamPF002497.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2270117IPR009057Homeodomain-like
CDDcd001673.37E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEENIIC SLYVSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQAQAQ AHAHAQAQAR RAKQEMKRES YENFMVPGVM NQSPYWPVEL PVAVPIVCAA  180
QYPPPLEDQA ALTNFLMKLG GRFSDNHQQP NLTTATTDLQ YPIGNHIISS PQDQLYANSM  240
SMLTSSTTTN SIGSTCTQLT NMVQGLENFP CEVQLGYNNP QQQLNGLEGF YGMDMVNAST  300
AGTTTTTSSC ESASWGDISS LVNVYPPLVS DYEGTPQPQD SAFGDLSYFR PIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895609.10.0transcription factor RAX3-like
SwissprotQ9M2Y96e-88RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2N9J9941e-172A0A2N9J994_FAGSY; Uncharacterized protein
STRINGEOX917831e-137(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-76myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]