PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07365-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 215aa    MW: 24685.3 Da    PI: 4.8623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07365-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-2075124255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +g+W++eIrdp+e   +kr +lg+f taeeAa+a+++a+ k++g
  augustus_masked-scaffold07365-abinit-gene-0.0-mRNA-1  75 RYRGVRQRP-WGKWASEIRDPRE---KKRKWLGTFQTAEEAARAYDKAAIKFRG 124
                                                           8********.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-3574134No hitNo description
SuperFamilySSF541717.19E-2475134IPR016177DNA-binding domain
SMARTSM003801.8E-4075138IPR001471AP2/ERF domain
PfamPF008474.9E-1375124IPR001471AP2/ERF domain
PROSITE profilePS5103225.0475132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3375133IPR001471AP2/ERF domain
PRINTSPR003671.8E-117687IPR001471AP2/ERF domain
PRINTSPR003671.8E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MWCPWRTIIT EEQEYDIMVS ALKHVITGGI HGLTPQHHQL LEQQPVLASA ATLSLPSTSK  60
RSSKKKKEKN DNEKRYRGVR QRPWGKWASE IRDPREKKRK WLGTFQTAEE AARAYDKAAI  120
KFRGPRAKLN FPLSDDGEKP NDVEEDQVAE QDHNLEVNPN VNAETMTESE TQTTEVANGN  180
DEENEFLDWF TLEELEGLLN GWPDNLNDPT NDSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2374133161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967KRSSKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912581.11e-125ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2N9H8T23e-51A0A2N9H8T2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-20redox responsive transcription factor 1