PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 256aa    MW: 28422.5 Da    PI: 6.2424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-055577123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          y+C+ C++ F++   L  H++ H
  augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1 55 YTCSFCNREFRSAQALGGHMNIH 77
                                                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.99E-75281No hitNo description
Gene3DG3DSA:3.30.160.603.3E-45379IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00195577IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-75578IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.515582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEQAPYWMCT RRKQVLQSHF PPSMNSFNSS SWEEKAFAED SAGTLGGCVW PPRSYTCSFC  60
NREFRSAQAL GGHMNIHRRD RARLKQSLSP SNEPLHKSLE GQFSTEINSK LSHNLVSKSC  120
PSEYTFKSAY SCSSSVQSWS NPVRVGLLSI SEPNPEVGKN QRDQEDSVGL GYDGDYVETD  180
LSVGMNSFVS QNRPTGSCGD EAASCKKPRT AVSSLSFVLK PFSDDRYHLQ SEVIEVLNPS  240
TMEGLDLELR LGDTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-135077229superman protein
2l1o_A6e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883810.11e-169transcriptional regulator SUPERMAN-like
TrEMBLA0A2N9FDQ61e-114A0A2N9FDQ6_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g02120.t017e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-28C2H2 family protein