PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07489-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 651aa    MW: 72304 Da    PI: 6.9382
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07489-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.37e-12315371155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                                                           s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++
  augustus_masked-scaffold07489-abinit-gene-0.2-mRNA-1 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDLEEKAARAYDLAALKYW 370
                                                           78*******************87776664446666.77***9**************9 PP

                                                   AP2  55 g 55 
                                                           g
  augustus_masked-scaffold07489-abinit-gene-0.2-mRNA-1 371 G 371
                                                           8 PP
2AP245.71.6e-14416465355
                                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  augustus_masked-scaffold07489-abinit-gene-0.2-mRNA-1 416 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 465
                                                           9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-9315371IPR001471AP2/ERF domain
CDDcd000186.23E-19315379No hitNo description
SuperFamilySSF541713.4E-14315381IPR016177DNA-binding domain
SMARTSM003801.4E-22316385IPR001471AP2/ERF domain
PROSITE profilePS5103217.425316379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-12316380IPR001471AP2/ERF domain
PRINTSPR003675.0E-6317328IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17414474IPR016177DNA-binding domain
CDDcd000181.30E-24414475No hitNo description
SMARTSM003801.5E-33415479IPR001471AP2/ERF domain
PROSITE profilePS5103219.177415473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18415473IPR001471AP2/ERF domain
PfamPF008472.8E-9416465IPR001471AP2/ERF domain
PRINTSPR003675.0E-6455475IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MKSMENDDNN NNNKWLGFSL SPHMTMEVPS GPSNQHQTHP STGAVPANFF NSSPHLNYGI  60
YYGAEGENAS FYSPLSMMPL KSDGSLCIME ALNRSQQPQA MVTTSTPKLE DFFGGATMGT  120
HHFDSNDREA MVLSLDSMFY SQNPDQQPNN QNCLDHFQPN SRHQEQPQQI QDQQYSYYSG  180
FRSHDMMLGE ARENQFADCS LQLPTVAGDG VPGMKNWISR NFSANHSVEQ KMIGCMGDNG  240
GESGTIGAVA YGDLQSLSLS MSPGSQSSSV TGSQHVSPTV TDCTAMDTKK RGPEKVDQKP  300
IVHRKSLDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDLEEKAAR  360
AYDLAALKYW GPSTHINFPL ENYEKELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT  420
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVNAVT NFDITRYNVE  480
RIMASSTLLA GEQAKRNKET GSTIEVLNNP STDSSNGEAF LSQKNNECES DWKTVINQSS  540
QELNYKPLKF ENYRTQSFSV SSHSMIQQEV EDSTKMGTHV SNASSLVTSV SSSREGSPDK  600
TSLPVLLGLP PTASKLFTSP TGAVNSWIPS AQLRPAHSVP HMPVFAAWTD A
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918657.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-146CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2N9FZP10.0A0A2N9FZP1_FAGSY; Uncharacterized protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-124AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]