PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 260aa    MW: 28898.8 Da    PI: 4.7797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-16163233274
                                                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet 58 
                                                           +Y++YA   GFs+rk+  +ks+ ng +++r+++C+++g+r ++ ++  + r++r+et
  augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1 163 CYSRYAVLEGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYRPTKYNS--NVRKSRQET 217
                                                           7***************************************999888..9999***** PP

                                                  FAR1  59 rtgCkaklkvkkekdg 74 
                                                           rtgC a++++ ++ +g
  augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1 218 RTGCLAHMTIARQPNG 233
                                                           **********999654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-14163233IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSTEGQMGSG EPNITGHPRE KDIENECQTS STLVIDTKQE SQSPKESFVE QGHVVVGGEH  60
ESQSPTVSSV DKSQVVIDSD HDSETPSVSS VDKSQEEIDG EDCQTPRVSN ISKFEMDIVG  120
EQECQNPNAI SAGVSVVVKS EDDVYAIPKV GMEFESEDDA YKCYSRYAVL EGFSIRKDFV  180
NKSRVNGAVV SRRYTCYRQG YRPTKYNSNV RKSRQETRTG CLAHMTIARQ PNGYVAEFQV  240
HQNGCCILHG AWQPELRSQI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895087.11e-151protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A2N9F6M31e-137A0A2N9F6M3_FAGSY; Uncharacterized protein
STRINGXP_008230452.13e-84(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-14FAR1 family protein