PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 524aa    MW: 58456.3 Da    PI: 8.8809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057597123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C++C+k F r  nL+ H r H
  augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                                                          89*******************88 PP
2zf-C2H212.10.0006151173123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           +kC++C+k +  +s+ k H +t+
  augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1 151 WKCEKCSKIYAVQSDWKAHSKTC 173
                                                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.39E-67497No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.4E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576673.39E-6146171No hitNo description
SMARTSM00355170151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPMVSTISPQ QTQKIKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE IRKRAYVCPE  120
PSCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRW  180
KSLGWSLFLF LSGFCFVVVL TQEWKDSFIT HRAFCDALAE ESARLSANQL ATGSTSPTIV  240
QTLFPFQTQQ QFTTPPQTHM SLHPWDPPAP QQNPNPNSII NNNNPSQNPL LLHQIKPEEQ  300
LEPHHFHIPQ TYFHNHNNNH NHNHHHKALI NSPFQTISNP ATSAHLSATA LLQKAATVGL  360
APTANAAQQA QSVGHMISSA EFGTPSHHHH QIQMDPAVSH MISSSSNDQY NIADQFTSRN  420
LATWHNTDRL TRDFLGLTDI AAGNGNVTTN TTVTNTTNTG HGHGPGHVNV SINVKNMLAY  480
TDGVGFPHQQ QQQHYNERDH TSMLNMKSQG FGLADPSSET WGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-24147227367Zinc finger protein JACKDAW
5b3h_F6e-24147227367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-128AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912926.10.0protein indeterminate-domain 12-like
TrEMBLA0A2N9G6I00.0A0A2N9G6I0_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s04880.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-101indeterminate(ID)-domain 12