PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08135-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 203aa    MW: 22117 Da    PI: 9.7047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08135-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-1970120255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                            ++GVr+++ +g+++AeIrdp++ng  +r++lg++  ae+Aa a+++a+ k++g
  augustus_masked-scaffold08135-abinit-gene-0.0-mRNA-1  70 NFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYEAAEDAALAYDKAAFKMRG 120
                                                           58*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.180.103.3E-43683IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd000181.37E-2969130No hitNo description
SMARTSM003801.7E-3870134IPR001471AP2/ERF domain
PROSITE profilePS5103223.35470128IPR001471AP2/ERF domain
PfamPF008477.6E-1370120IPR001471AP2/ERF domain
PRINTSPR003672.9E-137182IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2271129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3184129IPR001471AP2/ERF domain
PRINTSPR003672.9E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVVYSALRDA VNVGWVPLSQ SNDITATTSM TMMTTATATN NEVDVVDLET THQHAVGEAR  60
EVHVQRSGTN FRGVRRRPWG KYAAEIRDPK KNGARVWLGT YEAAEDAALA YDKAAFKMRG  120
SKAKLNFPHL IGSSSSSECD QPVRVGVKRG SAELSTLTLK PELKKNKFVG SSAAHEAGSN  180
VETLLDVFEL RSAMAKTWPH VIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3168134369ATERF1
3gcc_A2e-3168134369ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878406.11e-114ethylene-responsive transcription factor 13-like
TrEMBLA0A2N9EUX38e-76A0A2N9EUX3_FAGSY; Uncharacterized protein
STRINGGorai.004G165800.14e-49(Gossypium raimondii)
STRINGEOX964594e-49(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-33ethylene-responsive element binding factor 13