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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | GRAS | ||||||||
| Protein Properties | Length: 834aa MW: 92226.9 Da PI: 5.5645 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 319.4 | 7.4e-98 | 469 | 833 | 3 | 374 |
GRAS 3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlar.sv 57
++L++ A+ +++g++ +aq +Larl+++ sp g+p+qR+a+yf+eAL+ + +
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 469 DQLYQLADLIETGNNPvRAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLFRNtNN 525
79**********87766********************************99999566 PP
GRAS 58 selykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervH 113
+++ ++l +s+ ++ + + ++ a+k fsevsP+l+f+++t+Nqa+lea++g +++H
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 526 TNCNASLsLSSPPPPISLIYKIGAYKSFSEVSPVLQFANFTCNQALLEALDGFDTIH 582
677777744555556679*************************************** PP
GRAS 114 iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
iiDfdi+ G+QW +L+q+La +++g p l+iT+++sp+++++ el t+e L++fA+
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 583 IIDFDIGFGGQWSSLMQELALKQGGGPALKITAFASPSTHNELELGFTQESLKHFAT 639
********************************************************* PP
GRAS 171 elgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
e+++ fef++l ++l++ + Lrv++ Ea+aVnl + ++ + ++sl+
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 640 EINLAFEFDFLSLESLNSGsWPLPLRVSESEAIAVNLPIGSFSNY--PLSLPL---- 690
**********966666665236678**************877776..777777.... PP
GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
vL +vk+lsPk+v+ ++ +d ++ +F ++++a++ ys lf+sl+a ++++ +
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 691 VLGFVKQLSPKIVISLDRGCDQTDVPFPLHIIHAVQSYSGLFESLDAV-NVNQDALQ 746
*********************************************655.45778889 PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
+Er ll++ i+++v ++ + Wr+ + ++GF+p+++s+++++qa++l
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 747 RIERYLLQPGIEKIVLGCRQS----PDRTPPWRSLFLSSGFSPLTFSNFTESQAECL 799
9*************9866665....68899*************************** PP
GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+++++++g++ve+++ slvl+W++++L+s+S+Wr
augustus_masked-scaffold09980-abinit-gene-0.2-mRNA-1 800 VQRTSVRGFHVEKNQTSLVLCWQRKELISASVWR 833
*********************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 44.102 | 441 | 813 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.6E-95 | 469 | 833 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 834 aa Download sequence Send to blast |
MFPNLARIEG SDFSDEGNDR ALEVERDLHV EIAHTTEHND DTWQPPTPLG PSGVMVLAEE 60 NKGNVKALLW VVVSYEVVGF VGCGGGCGLW RFWVVVEVEV VACFVVMKAM PLPFEEFQGK 120 GVLDFSTVSS DSLPHLHHHH HHHHHRHQQQ QLQKWHHTNK ENCYVGTEPT SVLDSRRSPS 180 PPTSTSTLSS SLGNGVASTT AAAAAAAAPE NHHQPSSQTS LDIGEKCGLG MEDWECVLSD 240 SSSGQEQSIL RLIMGDIEDP SLGLNKLLHQ DLEFNSGFGM IDQADAFGCL EMPNNLLPSI 300 DTSADFPFNG GGTNATRLGS VSTPNHNPMF SVATSNNLLP GSLSHSPAMF HHQQQQPVQT 360 IEAVDEKPQI FNPQMINPAR FAQNPALIMP TYAQLQEHQL VSPPQAKRHN LCGIGPNYQV 420 PKLPFSESEQ DFLRRQQQQQ QQQQQNQLQM QKVGNNDLAS QQQQQLLFDQ LYQLADLIET 480 GNNPVRAQGI LARLNHQLSP IGKPFQRAAF YFKEALQLLF RNTNNTNCNA SLSLSSPPPP 540 ISLIYKIGAY KSFSEVSPVL QFANFTCNQA LLEALDGFDT IHIIDFDIGF GGQWSSLMQE 600 LALKQGGGPA LKITAFASPS THNELELGFT QESLKHFATE INLAFEFDFL SLESLNSGSW 660 PLPLRVSESE AIAVNLPIGS FSNYPLSLPL VLGFVKQLSP KIVISLDRGC DQTDVPFPLH 720 IIHAVQSYSG LFESLDAVNV NQDALQRIER YLLQPGIEKI VLGCRQSPDR TPPWRSLFLS 780 SGFSPLTFSN FTESQAECLV QRTSVRGFHV EKNQTSLVLC WQRKELISAS VWRC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 5e-31 | 480 | 833 | 15 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023908707.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 27 | ||||
| TrEMBL | A0A2I4HCD6 | 0.0 | A0A2I4HCD6_JUGRE; scarecrow-like protein 22 | ||||
| STRING | EOX96296 | 0.0 | (Theobroma cacao) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3183 | 31 | 70 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00150.1 | 1e-122 | GRAS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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