PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold10186-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GRAS

Protein Properties

Length: 153aa MW: 16910.6 Da PI: 7.0408

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold10186-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	80.9	2.2e-25	41	148	1	110
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 l++lL ecA +++++++ a+ +L+++s+ as dgd++qR++ayf+eA a++++++ augustus_masked-scaffold10186-abinit-gene-0.1-mRNA-1 41 LIKLLDECAIHIAADSMLSANICLEHISHFASADGDAIQRITAYFMEAFANKMLKNL 97 578999************************************************* PP GRAS 58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegee 110 + l ka++ ++ s ++ ee+++++lf++++ +lk++++++NqaI ea+ege+ augustus_masked-scaffold10186-abinit-gene-0.1-mRNA-1 98 PDLHKAFNKTKIS--SVYEEIHVQRLFFKLCLFLKVAYVITNQAIIEAMEGEK 148 ***988887..6********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.395	15	153	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-23	41	148	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MAGAKDGRPS ASLESGPWMP LSPGLGSQFR RPLSGEVALQ LIKLLDECAI HIAADSMLSA 60 NICLEHISHF ASADGDAIQR ITAYFMEAFA NKMLKNLPDL HKAFNKTKIS SVYEEIHVQR 120 LFFKLCLFLK VAYVITNQAI IEAMEGEKGS SYY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022743755.1	5e-53	scarecrow-like protein 3
Refseq	XP_022743756.1	5e-53	scarecrow-like protein 3
Refseq	XP_022743757.1	5e-53	scarecrow-like protein 3
Refseq	XP_022743758.1	5e-53	scarecrow-like protein 3
Refseq	XP_022743759.1	5e-53	scarecrow-like protein 3
Refseq	XP_022743760.1	5e-53	scarecrow-like protein 3
Swissprot	Q9LPR8	2e-35	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2N9ENQ1	2e-71	A0A2N9ENQ1_FAGSY; Uncharacterized protein
STRING	VIT_13s0019g01220.t01	8e-49	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21498	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	9e-38	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]