PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 170aa    MW: 19084.4 Da    PI: 10.3268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144163123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C+ C++ F++   L  H  +H
  augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1 41 FECKTCNRQFPSFQALGGHRASH 63
                                                          89**********99999998887 PP
2zf-C2H211.60.0008489111123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++Cg  F     L  H+r+H
  augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1  89 HECSICGLEFAMGQALGGHMRRH 111
                                                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.1E-134065IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-840111No hitNo description
SMARTSM003550.164163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.914168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.2289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.14189111IPR007087Zinc finger, C2H2
PfamPF139121.3E-1089112IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTMKRMREDG GIESLDMANC LMLLSRSLKT MPRKASRADV FECKTCNRQF PSFQALGGHR  60
ASHKRPKLTG EELKEHTKTQ NLGNKPKMHE CSICGLEFAM GQALGGHMRR HRVTMDGSFS  120
SATIEKKVPV LKRSNSTSVM CLDLNLTPLE NDLKLLFGKK APQIDFTLMV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921570.11e-112zinc finger protein ZAT11-like
SwissprotQ9SLD46e-45ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2N9EGY91e-100A0A2N9EGY9_FAGSY; Uncharacterized protein
STRINGGorai.006G176000.14e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-47C2H2 family protein