PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WOX

Protein Properties

Length: 200aa MW: 22950.3 Da PI: 6.8058

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.9e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 r+R+++t+eql++Le++Fe+ n +p+ ++++e++++l +++e++V++WFqNrRa+ augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 22 RQRWSPTTEQLQILERFFEEdNGTPNNQRIKEITTELaqhgKISESNVYNWFQNRRARL 80 79***************99***********************************9 PP HC CS Homeobox 56 kk 57 ++ augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 81 RR 82 97 PP
2	Wus_type_Homeobox	91.4	8.4e-30	22	84	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRe 61 r+RW+Pt+eQ++iLe+ +++ tPn+++i++it+eL+++Gki++ NV++WFQNr+aR augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 22 RQRWSPTTEQLQILERFFEEDNGTPNNQRIKEITTELAQHGKISESNVYNWFQNRRARL 80 79******************************************************* PP Wus_type_Homeobox 62 rqkq 65 r+kq augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 81 RRKQ 84 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-16	16	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.645	18	83	IPR001356	Homeobox domain
SMART	SM00389	9.6E-13	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	21	84	IPR009057	Homeodomain-like
CDD	cd00086	1.51E-13	22	84	No hit	No description
Pfam	PF00046	1.3E-18	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRQGSLYYDA WIASSGQKMN IRQRWSPTTE QLQILERFFE EDNGTPNNQR IKEITTELAQ 60 HGKISESNVY NWFQNRRARL RRKQSVPEPQ KPESETAKEV QSLKEKKMRP ESTLSYENSA 120 QRSKTIHLQQ GPETSTEILR LNSRSNEGEP TFPSDSDLSF SGSLGHMSFV PTPGTNRFGE 180 MEVPGNYNPY CYGEGYDMAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023908230.1	1e-141	WUSCHEL-related homeobox 8-like
TrEMBL	A0A2N9HA52	1e-103	A0A2N9HA52_FAGSY; Uncharacterized protein
STRING	VIT_18s0122g01140.t01	6e-63	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-36	WUSCHEL related homeobox 13