PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11265-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 257aa    MW: 28114.2 Da    PI: 4.3416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11265-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1972122155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           + y+GVr++  +g+WvAeIr+p   + r k+ +lg+f+ta++Aa a+++a+++++g
  augustus_masked-scaffold11265-abinit-gene-0.3-mRNA-1  72 CNYRGVRQRT-WGKWVAEIREP---N-RgKKLWLGTFDTADDAASAYDEAARAIYG 122
                                                           56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-3372132No hitNo description
PfamPF008471.4E-1272122IPR001471AP2/ERF domain
SMARTSM003807.2E-3773136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3273132IPR001471AP2/ERF domain
PROSITE profilePS5103222.37973130IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2273132IPR016177DNA-binding domain
PRINTSPR003674.5E-107485IPR001471AP2/ERF domain
PRINTSPR003674.5E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVYLDQGVPM ESSKKRKTRG EGLSVTETLA KWRDYNAQLQ SSGGDVKRTR KLSKGPKKGC  60
MKGKGGPENS GCNYRGVRQR TWGKWVAEIR EPNRGKKLWL GTFDTADDAA SAYDEAARAI  120
YGASARLNFP ESVSTVLGPT PAGFEASADE EIHYAVTEAA SLVETDVKDE STAMPSTSSL  180
VKDESTGDSE QKELLAFSEY ELFDDAELMA LLKDIPPDFT DSVLDFGFDV NQLGFPDVEV  240
DMPSLVDTEG KDELVNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1871135368ATERF1
3gcc_A2e-1871135368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897506.11e-149dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR28e-45DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2N9GRQ35e-63A0A2N9GRQ3_FAGSY; Uncharacterized protein
STRINGBo4g190040.15e-51(Brassica oleracea)
STRINGXP_002520794.19e-51(Ricinus communis)
STRINGXP_004293490.11e-51(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.12e-29DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]