PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold11284-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 247aa MW: 26723.9 Da PI: 6.8808

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold11284-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H augustus_masked-scaffold11284-abinit-gene-0.0-mRNA-1 94 FSCNYCRRKFFSSQALGGHQNAH 116 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-6	92	122	No hit	No description
PROSITE profile	PS50157	11.302	94	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVTPNSNLES ENESEVSSQV ASNVPVQEAS LDLSKDTTTN SSCLTNAIKP QPDPKPVSLD 60 LTLHFSTIDA NVKATDETGE AAAHNSAATV PRVFSCNYCR RKFFSSQALG GHQNAHKRER 120 TMAKRAMRMG MFSDRYTSLA SLPLHGSAFR SLGIEAHAAM HQRILPSERP PRGGARFEQG 180 YFGVPMFVED DDVGLFWPGS FRQVSEPVGA VGGNLAVELA QNSNMNFVVT APPPRTTSSS 240 PDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893198.1	1e-172	zinc finger protein 4-like
Refseq	XP_023893199.1	1e-172	zinc finger protein 4-like
Refseq	XP_023893200.1	1e-172	zinc finger protein 4-like
Refseq	XP_023893201.1	1e-172	zinc finger protein 4-like
Refseq	XP_023893202.1	1e-172	zinc finger protein 4-like
Swissprot	Q39263	5e-47	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2N9HV26	1e-155	A0A2N9HV26_FAGSY; Uncharacterized protein
STRING	EOY01311	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	7e-47	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]