PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold11287-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 264aa MW: 29447.9 Da PI: 4.7882

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold11287-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	6.1e-18	81	130	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g augustus_masked-scaffold11287-abinit-gene-0.1-mRNA-1 81 TFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 130 59**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.0E-37	81	144	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.906	81	138	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-31	81	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-21	81	139	IPR016177	DNA-binding domain
PRINTS	PR00367	6.9E-10	82	93	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-12	82	130	IPR001471	AP2/ERF domain
CDD	cd00018	3.04E-32	82	140	No hit	No description
PRINTS	PR00367	6.9E-10	104	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEDHINLESE AHDNLLSSSS SSTSTSTSSS SSSTTKNNSC TNNQNTKHSL RDSKRAQESN 60 ESEHRKQPRT TKDDNDGKHP TFRGVRMRNW GKWVSEIREP RKKSRIWLGT YPTAEMAARA 120 HDVAALAIKG TSAYLNFPEL AQELPRPDSK SPKDIQAAAA KAAAATFLEP KQCEHEAEAE 180 AELSQAEHLQ PGLDSSTILS MDNTQDSTFS PSTDDDDTLF DLPDLFVDGR DRSDNGFCYY 240 SSSWQLCAAD TGFRLEEPNL WEYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	79	138	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023880636.1	1e-154	ethylene-responsive transcription factor ERF034-like
Swissprot	Q8LBQ7	5e-68	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2I4HA50	1e-102	A0A2I4HA50_JUGRE; ethylene-responsive transcription factor ERF034
STRING	cassava4.1_021971m	2e-97	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	4e-48	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]