PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11955-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 228aa    MW: 25974.7 Da    PI: 6.7271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11955-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17118168255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +g+++AeIrdp+      r++lg+f+t  +Aa+a++ a+ k++g
  augustus_masked-scaffold11955-abinit-gene-0.0-mRNA-1 118 HYRGVRRRP-WGKFAAEIRDPTRK--GHRVWLGTFDTDVDAARAYDCAAFKMRG 168
                                                           7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-32117177IPR001471AP2/ERF domain
PROSITE profilePS5103224.447118176IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23118177IPR016177DNA-binding domain
CDDcd000187.91E-29118176No hitNo description
PfamPF008476.2E-13118168IPR001471AP2/ERF domain
SMARTSM003805.1E-37118182IPR001471AP2/ERF domain
PRINTSPR003674.4E-13119130IPR001471AP2/ERF domain
PRINTSPR003674.4E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MATPAANESS TIELIRQHLL GDFTSTEYFI NSLNFSSSPK AYYATQPVKH EAQSPPSDSE  60
SNSLILDSNY HNQQASDFET KPHISSPKHL SKKACIESKV PEVAEGSNKK SDYSEWRHYR  120
GVRRRPWGKF AAEIRDPTRK GHRVWLGTFD TDVDAARAYD CAAFKMRGRK AILNFPLEAG  180
ASNHLPVIET NGRKRRREKR VETPESDDVA VESWVFWERE DQEEDESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27117177464ATERF1
3gcc_A1e-27117177464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196RKRRR
2192198RKRRREK
3192199RKRRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922407.11e-147ethylene-responsive transcription factor ERF107-like
TrEMBLA0A2N9G9I41e-117A0A2N9G9I4_FAGSY; Uncharacterized protein
STRINGPOPTR_0003s15060.11e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-41ERF family protein