PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold12619-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 228aa    MW: 25008.1 Da    PI: 9.3242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold12619-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.2e-212676256
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                          +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  augustus_masked-scaffold12619-abinit-gene-0.0-mRNA-1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 76
                                                          69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-392689IPR001471AP2/ERF domain
PROSITE profilePS5103223.8152683IPR001471AP2/ERF domain
PfamPF008472.0E-142675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-322683IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-222683IPR016177DNA-binding domain
CDDcd000184.57E-182682No hitNo description
PRINTSPR003671.4E-112738IPR001471AP2/ERF domain
PRINTSPR003671.4E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAIKEKQLGV KKGSSIGKAT NEKEMHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDAAA REFRGAKAKT NFTLPSEDLP INHSPSESST VESSSRDAPT RDATRRMESV  120
AESGVVVGRF PFLNQQPYVG ACAGVVGGFP VHARPVLFFD TMVRPEFVAQ SYPLRFDPSP  180
VEFNSGIVGG AQAPTQTQSD SDSSWGIDYK PRKEILNLDL NLAPPMDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202384264ATERF1
3gcc_A1e-202384264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889618.11e-131ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-52ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2N9GGK32e-92A0A2N9GGK3_FAGSY; Uncharacterized protein
STRINGXP_008455284.11e-62(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-35erf domain protein 9