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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | GRAS | ||||||||
| Protein Properties | Length: 759aa MW: 85464.9 Da PI: 7.0232 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 380.7 | 1.8e-116 | 386 | 757 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57
l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla+yf+ +L+ar+a+++
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 386 LRTLLINCAQAVAADDQRSASELLKQIRQHSSPFGDGNQRLAHYFADGLEARMAGTG 442
6789***************************************************** PP
GRAS 58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
s++y+ l++++ s +++l+a++l+ +s + k+s +t N++I+ +++++rvH+
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 443 SQIYRGLASKKLS---AADALKAHHLYLAASSFEKMSIFTSNRTIMSGAAKATRVHV 496
*********9999...9**************************************** PP
GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
iDf+i +G+QWp+L+q ++ R++gpp+lRiTg++ p++g +e++eetg+rLa++A
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 497 IDFGILYGFQWPTLIQRISWRDGGPPKLRITGIDFPQPGfrPAERVEETGRRLANYA 553
**************************************9****************** PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
e+++vpfe+n+ +ak++e+++leeL+++++E l+Vn+ ++ ++l+des +++s r+
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 554 ESFKVPFEYNA-IAKKWETIQLEELKIDRDEFLVVNCLYRAKNLPDESFAVDSSRNI 609
***********.7******************************************** PP
GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
+L+l+++++P+++++ + n++ F++rf eal +ysalfd+le+ +pre++er+
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 610 FLNLIRKINPDIFIHGVVNGAFNAPFFVTRFREALFHYSALFDMLETIVPREERERM 666
********************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
+E+e++gr++ nv+aceg er+er et+++W+ r+ +aGF ++pl+ ++++ a
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 667 LLEKEVFGRQALNVIACEGWERVERPETYKQWQVRILRAGFAQLPLDRQIMERAIDK 723
********************************************************* PP
GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+r+ + + + ++e+ ++v+gWk+r ++++S+W+
augustus_masked-scaffold13000-abinit-gene-0.0-mRNA-1 724 VRTSYHKDFVIHEDGRWMVQGWKGRIIYALSCWK 757
*****888*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 66.335 | 360 | 737 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 6.3E-114 | 386 | 757 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 759 aa Download sequence Send to blast |
MDSRFSGFSG SANGVQFGNP SFSVLSNENL VARSRFDNAL SDHNVRGFHF LESDQTPSHI 60 APSSSVNERE DSPEDCDFSD AVLNYINQIL MEEDMEDKTC MLQESLELQA AEKSFYEVLG 120 KKYPPSPEHR LAYINQNDGS SNDHHHVYYT NYYPSSSDNS SRFFGDNSLI QSQGEEYIIS 180 QLQSHPLYRI PQSSYSSSNS VISSSVDGLV DSPSSPLQVP DSNFESQSVW QFRKGVEEAN 240 KFLPSGSQLY VNLEANGLSY MEPKAGIGNL EFKVEGKDAG KYSSTGSRGK KNPYREDGDV 300 EVERSSKLPA VFTDSILRSD LFDKILLHSS GAGREALQAR REGLAASREA LQNVKSKTVP 360 LNGKSKGTNG GRGRAKKQSG KEVVDLRTLL INCAQAVAAD DQRSASELLK QIRQHSSPFG 420 DGNQRLAHYF ADGLEARMAG TGSQIYRGLA SKKLSAADAL KAHHLYLAAS SFEKMSIFTS 480 NRTIMSGAAK ATRVHVIDFG ILYGFQWPTL IQRISWRDGG PPKLRITGID FPQPGFRPAE 540 RVEETGRRLA NYAESFKVPF EYNAIAKKWE TIQLEELKID RDEFLVVNCL YRAKNLPDES 600 FAVDSSRNIF LNLIRKINPD IFIHGVVNGA FNAPFFVTRF REALFHYSAL FDMLETIVPR 660 EERERMLLEK EVFGRQALNV IACEGWERVE RPETYKQWQV RILRAGFAQL PLDRQIMERA 720 IDKVRTSYHK DFVIHEDGRW MVQGWKGRII YALSCWKPA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 4e-47 | 392 | 758 | 25 | 380 | Protein SCARECROW |
| 5b3h_A | 4e-47 | 392 | 758 | 24 | 379 | Protein SCARECROW |
| 5b3h_D | 4e-47 | 392 | 758 | 24 | 379 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023889886.1 | 0.0 | scarecrow-like protein 9 | ||||
| Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
| TrEMBL | A0A2I4FWP1 | 0.0 | A0A2I4FWP1_JUGRE; scarecrow-like protein 9 | ||||
| STRING | XP_008240788.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF131 | 34 | 339 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G37650.1 | 0.0 | GRAS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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