PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold13590-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 490aa    MW: 53035.1 Da    PI: 9.6069
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold13590-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.3e-2492136145
                                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  augustus_masked-scaffold13590-abinit-gene-0.0-mRNA-1  92 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 136
                                                           79****************************************985 PP
2QLQ64.72.2e-222258137
                                                   QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                                          ++FT++Q+++L++Q+l+yKyL an+PvP++Ll +i+k
  augustus_masked-scaffold13590-abinit-gene-0.0-mRNA-1 22 GPFTPSQWMELEHQALIYKYLTANMPVPSNLLIPIRK 58
                                                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-132258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.6462358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-162357IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.66392136IPR014977WRC domain
PfamPF088795.5E-2193135IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGYSSGSLNG TGMHGALAGA RGPFTPSQWM ELEHQALIYK YLTANMPVPS NLLIPIRKAL  60
DSAGFTSFPG GLLRPNRLGW GSFHLGFSNN TDPEPGRCRR TDGKKWRCSR DAVADQKYCE  120
RHMNRGRHRS RKPVEGQNGH AVSGTPTTNI STSTSTSDTI SKLSPIASSS SASVVVPGGA  180
SNSLAIAAHQ QLKNLQSGAS NPSAATTINR MFIHKENVGE RMQHTSGLSI LSSSIDHKPK  240
ENSFMNQKRQ IPYEESTRTE FGLVTSDALL NPSSKSSSLM NCSSQELSER RTESLQSLRH  300
FIDYWPKIQS DRSAVSWPEL DMQSDSTQLS ISIPTASSEF ISSTSSPSSN EKLTHSPLRL  360
SRELDPRRMG LGVSSVINEP NQRQLNWIPM SWETSMGGPL GEVLHHSNNN VADCRRSSAL  420
NLMTAGWDSS PPLGSSPTGV LQKTTFGSLS NSSAGSSPRA DNHRTLEGDS LRNDLLGSTL  480
LNSSLSLPAL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733688e-57AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872645.10.0growth-regulating factor 1-like
SwissprotQ6AWY31e-121GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A2N9F1V90.0A0A2N9F1V9_FAGSY; Uncharacterized protein
STRINGVIT_18s0001g08650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-84growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]